Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3570

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3568 and Psyr_3569 are separated by 1 nucleotidesPsyr_3569 and Psyr_3570 overlap by 4 nucleotidesPsyr_3570 and Psyr_3571 are separated by 76 nucleotides Psyr_3568: Psyr_3568 - Succinylglutamate desuccinylase/aspartoacylase, at 4,249,849 to 4,250,961 _3568 Psyr_3569: Psyr_3569 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,250,963 to 4,251,661 _3569 Psyr_3570: Psyr_3570 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,251,658 to 4,252,347 _3570 Psyr_3571: Psyr_3571 - L-arginine-binding protein / L-ornithine-binding protein, at 4,252,424 to 4,253,200 _3571 Position (kb) 4251 4252 4253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.868 kb on - strandat 4250.868 kb on - strandat 4250.868 kb on - strandat 4250.868 kb on - strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.986 kb on - strandat 4251.048 kb on + strand, within Psyr_3569at 4251.048 kb on + strand, within Psyr_3569at 4251.049 kb on - strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.087 kb on + strand, within Psyr_3569at 4251.087 kb on + strand, within Psyr_3569at 4251.158 kb on - strand, within Psyr_3569at 4251.190 kb on - strand, within Psyr_3569at 4251.237 kb on + strand, within Psyr_3569at 4251.238 kb on - strand, within Psyr_3569at 4251.341 kb on - strand, within Psyr_3569at 4251.436 kb on - strand, within Psyr_3569at 4251.438 kb on + strand, within Psyr_3569at 4251.439 kb on - strand, within Psyr_3569at 4251.439 kb on - strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.489 kb on + strand, within Psyr_3569at 4251.490 kb on - strand, within Psyr_3569at 4251.490 kb on - strand, within Psyr_3569at 4251.490 kb on - strand, within Psyr_3569at 4251.490 kb on - strand, within Psyr_3569at 4251.618 kb on + strandat 4251.619 kb on - strandat 4251.619 kb on - strandat 4251.648 kb on + strandat 4251.648 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.662 kb on - strandat 4251.662 kb on - strandat 4251.662 kb on - strandat 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.956 kb on + strand, within Psyr_3570at 4252.025 kb on + strand, within Psyr_3570at 4252.025 kb on + strand, within Psyr_3570at 4252.038 kb on + strand, within Psyr_3570at 4252.085 kb on + strand, within Psyr_3570at 4252.085 kb on + strand, within Psyr_3570at 4252.085 kb on + strand, within Psyr_3570at 4252.086 kb on - strand, within Psyr_3570at 4252.086 kb on - strand, within Psyr_3570at 4252.193 kb on + strand, within Psyr_3570at 4252.426 kb on - strandat 4252.426 kb on - strandat 4252.426 kb on - strandat 4252.426 kb on - strandat 4252.426 kb on - strandat 4252.426 kb on - strandat 4252.452 kb on + strandat 4252.452 kb on + strandat 4252.452 kb on + strandat 4252.452 kb on + strandat 4252.453 kb on - strandat 4252.473 kb on + strandat 4252.473 kb on + strandat 4252.473 kb on + strandat 4252.474 kb on - strandat 4252.474 kb on - strandat 4252.474 kb on - strandat 4252.474 kb on - strandat 4252.572 kb on + strand, within Psyr_3571at 4252.573 kb on - strand, within Psyr_3571at 4252.599 kb on - strand, within Psyr_3571at 4252.599 kb on - strand, within Psyr_3571at 4252.608 kb on + strand, within Psyr_3571at 4252.609 kb on - strand, within Psyr_3571at 4252.609 kb on - strand, within Psyr_3571at 4252.670 kb on - strand, within Psyr_3571at 4252.702 kb on - strand, within Psyr_3571at 4252.702 kb on - strand, within Psyr_3571at 4252.878 kb on + strand, within Psyr_3571at 4252.879 kb on - strand, within Psyr_3571at 4252.879 kb on - strand, within Psyr_3571at 4252.879 kb on - strand, within Psyr_3571at 4252.881 kb on + strand, within Psyr_3571at 4252.881 kb on + strand, within Psyr_3571at 4252.881 kb on + strand, within Psyr_3571at 4252.881 kb on + strand, within Psyr_3571at 4252.882 kb on - strand, within Psyr_3571at 4252.882 kb on - strand, within Psyr_3571at 4253.050 kb on - strand, within Psyr_3571at 4253.050 kb on - strand, within Psyr_3571

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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4,250,867 + +0.3
4,250,867 + +0.1
4,250,867 + +0.0
4,250,867 + +0.6
4,250,867 + +0.1
4,250,867 + -0.5
4,250,868 - -0.7
4,250,868 - -0.8
4,250,868 - -0.5
4,250,868 - +0.1
4,250,941 + -0.3
4,250,941 + +3.1
4,250,941 + +0.4
4,250,942 - +0.3
4,250,942 - +0.3
4,250,942 - -0.5
4,250,942 - -0.1
4,250,942 - +0.9
4,250,942 - +0.3
4,250,986 - +0.1
4,251,048 + Psyr_3569 0.12 +0.5
4,251,048 + Psyr_3569 0.12 -0.4
4,251,049 - Psyr_3569 0.12 +0.5
4,251,067 + Psyr_3569 0.15 -0.9
4,251,067 + Psyr_3569 0.15 +0.5
4,251,067 + Psyr_3569 0.15 -1.0
4,251,067 + Psyr_3569 0.15 -0.2
4,251,068 - Psyr_3569 0.15 +1.1
4,251,068 - Psyr_3569 0.15 -0.8
4,251,069 + Psyr_3569 0.15 +0.9
4,251,069 + Psyr_3569 0.15 -0.2
4,251,069 + Psyr_3569 0.15 +0.2
4,251,069 + Psyr_3569 0.15 -0.5
4,251,069 + Psyr_3569 0.15 -0.4
4,251,069 + Psyr_3569 0.15 -1.3
4,251,069 + Psyr_3569 0.15 -0.7
4,251,069 + Psyr_3569 0.15 -0.5
4,251,070 - Psyr_3569 0.15 -1.3
4,251,070 - Psyr_3569 0.15 -0.3
4,251,070 - Psyr_3569 0.15 +1.1
4,251,070 - Psyr_3569 0.15 +0.1
4,251,070 - Psyr_3569 0.15 -0.9
4,251,087 + Psyr_3569 0.18 -0.1
4,251,087 + Psyr_3569 0.18 +1.1
4,251,158 - Psyr_3569 0.28 +1.1
4,251,190 - Psyr_3569 0.32 +0.2
4,251,237 + Psyr_3569 0.39 +1.3
4,251,238 - Psyr_3569 0.39 -0.2
4,251,341 - Psyr_3569 0.54 +0.9
4,251,436 - Psyr_3569 0.68 +0.6
4,251,438 + Psyr_3569 0.68 -0.9
4,251,439 - Psyr_3569 0.68 -0.8
4,251,439 - Psyr_3569 0.68 +1.1
4,251,483 + Psyr_3569 0.74 -2.5
4,251,483 + Psyr_3569 0.74 -0.5
4,251,484 - Psyr_3569 0.75 -0.6
4,251,484 - Psyr_3569 0.75 +0.8
4,251,489 + Psyr_3569 0.75 +0.4
4,251,490 - Psyr_3569 0.75 +0.5
4,251,490 - Psyr_3569 0.75 +1.0
4,251,490 - Psyr_3569 0.75 -0.7
4,251,490 - Psyr_3569 0.75 +0.5
4,251,618 + +0.8
4,251,619 - -0.3
4,251,619 - -0.6
4,251,648 + -1.7
4,251,648 + +0.3
4,251,661 + +0.4
4,251,661 + +0.8
4,251,661 + +0.1
4,251,661 + +0.3
4,251,661 + -1.7
4,251,661 + -1.4
4,251,662 - +0.5
4,251,662 - +0.9
4,251,662 - -2.2
4,251,744 - Psyr_3570 0.12 +0.1
4,251,744 - Psyr_3570 0.12 -0.3
4,251,744 - Psyr_3570 0.12 +0.5
4,251,744 - Psyr_3570 0.12 +0.7
4,251,744 - Psyr_3570 0.12 -0.7
4,251,744 - Psyr_3570 0.12 -0.1
4,251,956 + Psyr_3570 0.43 +1.9
4,252,025 + Psyr_3570 0.53 +0.9
4,252,025 + Psyr_3570 0.53 +1.1
4,252,038 + Psyr_3570 0.55 +0.2
4,252,085 + Psyr_3570 0.62 +0.7
4,252,085 + Psyr_3570 0.62 +1.0
4,252,085 + Psyr_3570 0.62 +0.1
4,252,086 - Psyr_3570 0.62 +0.5
4,252,086 - Psyr_3570 0.62 -0.8
4,252,193 + Psyr_3570 0.78 +2.0
4,252,426 - +1.0
4,252,426 - -0.1
4,252,426 - +0.5
4,252,426 - +1.7
4,252,426 - -0.5
4,252,426 - -0.4
4,252,452 + -0.4
4,252,452 + -0.7
4,252,452 + +0.6
4,252,452 + -0.6
4,252,453 - -0.7
4,252,473 + -2.2
4,252,473 + -0.2
4,252,473 + -0.2
4,252,474 - +1.3
4,252,474 - -1.3
4,252,474 - -0.4
4,252,474 - +0.5
4,252,572 + Psyr_3571 0.19 -1.2
4,252,573 - Psyr_3571 0.19 +0.1
4,252,599 - Psyr_3571 0.23 +0.9
4,252,599 - Psyr_3571 0.23 -0.5
4,252,608 + Psyr_3571 0.24 +0.8
4,252,609 - Psyr_3571 0.24 -0.1
4,252,609 - Psyr_3571 0.24 +0.0
4,252,670 - Psyr_3571 0.32 +1.6
4,252,702 - Psyr_3571 0.36 +0.5
4,252,702 - Psyr_3571 0.36 -1.5
4,252,878 + Psyr_3571 0.58 -0.7
4,252,879 - Psyr_3571 0.59 +0.6
4,252,879 - Psyr_3571 0.59 +0.9
4,252,879 - Psyr_3571 0.59 -0.3
4,252,881 + Psyr_3571 0.59 +0.2
4,252,881 + Psyr_3571 0.59 -0.4
4,252,881 + Psyr_3571 0.59 -1.4
4,252,881 + Psyr_3571 0.59 -0.5
4,252,882 - Psyr_3571 0.59 +0.5
4,252,882 - Psyr_3571 0.59 -0.1
4,253,050 - Psyr_3571 0.81 -0.1
4,253,050 - Psyr_3571 0.81 -0.1

Or see this region's nucleotide sequence