Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2759

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2758 and Psyr_2759 are separated by 89 nucleotidesPsyr_2759 and Psyr_RNA43 are separated by 167 nucleotidesPsyr_RNA43 and Psyr_2760 are separated by 186 nucleotidesPsyr_2760 and Psyr_2761 are separated by 46 nucleotides Psyr_2758: Psyr_2758 - ABC transporter:TOBE, at 3,345,625 to 3,346,713 _2758 Psyr_2759: Psyr_2759 - Eukaryotic-like DNA topoisomerase I, at 3,346,803 to 3,347,873 _2759 Psyr_RNA43: Psyr_RNA43 - tRNA-Leu, at 3,348,041 to 3,348,126 _RNA43 Psyr_2760: Psyr_2760 - hypothetical protein, at 3,348,313 to 3,348,675 _2760 Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002 _2761 Position (kb) 3346 3347 3348Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3345.854 kb on - strand, within Psyr_2758at 3345.871 kb on + strand, within Psyr_2758at 3345.871 kb on + strand, within Psyr_2758at 3345.872 kb on - strand, within Psyr_2758at 3345.872 kb on - strand, within Psyr_2758at 3346.153 kb on + strand, within Psyr_2758at 3346.153 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.265 kb on + strand, within Psyr_2758at 3346.266 kb on - strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.379 kb on - strand, within Psyr_2758at 3346.758 kb on + strandat 3346.759 kb on - strandat 3346.798 kb on + strandat 3346.799 kb on - strandat 3346.848 kb on + strandat 3346.849 kb on - strandat 3346.849 kb on - strandat 3346.849 kb on - strandat 3346.849 kb on - strandat 3346.849 kb on - strandat 3346.853 kb on - strandat 3347.067 kb on + strand, within Psyr_2759at 3347.089 kb on + strand, within Psyr_2759at 3347.089 kb on + strand, within Psyr_2759at 3347.090 kb on - strand, within Psyr_2759at 3347.107 kb on - strand, within Psyr_2759at 3347.107 kb on - strand, within Psyr_2759at 3347.259 kb on + strand, within Psyr_2759at 3347.468 kb on - strand, within Psyr_2759at 3347.694 kb on + strand, within Psyr_2759at 3347.694 kb on + strand, within Psyr_2759at 3347.802 kb on + strandat 3347.802 kb on + strandat 3347.803 kb on - strandat 3347.812 kb on + strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.018 kb on + strandat 3348.187 kb on + strandat 3348.188 kb on - strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.192 kb on - strandat 3348.192 kb on - strandat 3348.192 kb on - strandat 3348.277 kb on - strandat 3348.290 kb on - strandat 3348.402 kb on + strand, within Psyr_2760at 3348.402 kb on + strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.422 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.590 kb on + strand, within Psyr_2760at 3348.635 kb on + strand, within Psyr_2760at 3348.765 kb on + strandat 3348.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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3,345,854 - Psyr_2758 0.21 +1.1
3,345,871 + Psyr_2758 0.23 -1.4
3,345,871 + Psyr_2758 0.23 -0.4
3,345,872 - Psyr_2758 0.23 +0.2
3,345,872 - Psyr_2758 0.23 +0.8
3,346,153 + Psyr_2758 0.48 -0.6
3,346,153 + Psyr_2758 0.48 -0.3
3,346,195 + Psyr_2758 0.52 +0.2
3,346,195 + Psyr_2758 0.52 +0.2
3,346,196 - Psyr_2758 0.52 +0.7
3,346,196 - Psyr_2758 0.52 +1.3
3,346,196 - Psyr_2758 0.52 +0.8
3,346,265 + Psyr_2758 0.59 -2.5
3,346,266 - Psyr_2758 0.59 +1.1
3,346,366 + Psyr_2758 0.68 +0.6
3,346,379 - Psyr_2758 0.69 -0.0
3,346,758 + -0.5
3,346,759 - -2.3
3,346,798 + -1.5
3,346,799 - -2.0
3,346,848 + +0.4
3,346,849 - -0.4
3,346,849 - -1.2
3,346,849 - +1.2
3,346,849 - +0.6
3,346,849 - -0.0
3,346,853 - +1.1
3,347,067 + Psyr_2759 0.25 -0.6
3,347,089 + Psyr_2759 0.27 +0.2
3,347,089 + Psyr_2759 0.27 -1.5
3,347,090 - Psyr_2759 0.27 +0.3
3,347,107 - Psyr_2759 0.28 -1.6
3,347,107 - Psyr_2759 0.28 +2.1
3,347,259 + Psyr_2759 0.43 +0.3
3,347,468 - Psyr_2759 0.62 -0.4
3,347,694 + Psyr_2759 0.83 -0.9
3,347,694 + Psyr_2759 0.83 +2.1
3,347,802 + -0.2
3,347,802 + -1.0
3,347,803 - -0.7
3,347,812 + +1.6
3,348,014 + +0.1
3,348,014 + +0.5
3,348,014 + +0.3
3,348,016 + +0.3
3,348,016 + -0.3
3,348,016 + +0.4
3,348,016 + +1.2
3,348,016 + -1.3
3,348,016 + +3.1
3,348,018 + -2.3
3,348,187 + +0.1
3,348,188 - -0.1
3,348,191 + -0.0
3,348,191 + -0.5
3,348,191 + -0.3
3,348,192 - -0.9
3,348,192 - -0.6
3,348,192 - +0.2
3,348,277 - -0.3
3,348,290 - -0.9
3,348,402 + Psyr_2760 0.25 +0.5
3,348,402 + Psyr_2760 0.25 +0.3
3,348,403 - Psyr_2760 0.25 -0.8
3,348,403 - Psyr_2760 0.25 +0.7
3,348,422 + Psyr_2760 0.30 +1.8
3,348,531 + Psyr_2760 0.60 -1.1
3,348,531 + Psyr_2760 0.60 +0.2
3,348,531 + Psyr_2760 0.60 +1.1
3,348,531 + Psyr_2760 0.60 -0.0
3,348,531 + Psyr_2760 0.60 -0.5
3,348,531 + Psyr_2760 0.60 +0.5
3,348,531 + Psyr_2760 0.60 +0.6
3,348,532 - Psyr_2760 0.60 +0.4
3,348,532 - Psyr_2760 0.60 -1.4
3,348,532 - Psyr_2760 0.60 +0.7
3,348,590 + Psyr_2760 0.76 -0.2
3,348,635 + Psyr_2760 0.89 -0.8
3,348,765 + -0.2
3,348,765 + +0.1

Or see this region's nucleotide sequence