Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1368

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1367 and Psyr_1368 are separated by 96 nucleotidesPsyr_1368 and Psyr_1369 are separated by 53 nucleotidesPsyr_1369 and Psyr_1370 overlap by 4 nucleotides Psyr_1367: Psyr_1367 - Zinc-containing alcohol dehydrogenase superfamily, at 1,550,472 to 1,551,584 _1367 Psyr_1368: Psyr_1368 - Carboxylesterase, at 1,551,681 to 1,552,526 _1368 Psyr_1369: Psyr_1369 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,552,580 to 1,553,053 _1369 Psyr_1370: Psyr_1370 - tRNA pseudouridine synthase D, TruD, at 1,553,050 to 1,554,108 _1370 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -2 -1 0 1 2at 1550.736 kb on + strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.853 kb on + strand, within Psyr_1367at 1550.877 kb on + strand, within Psyr_1367at 1550.904 kb on + strand, within Psyr_1367at 1550.905 kb on - strand, within Psyr_1367at 1550.911 kb on + strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367at 1551.450 kb on + strand, within Psyr_1367at 1551.450 kb on + strand, within Psyr_1367at 1551.450 kb on + strand, within Psyr_1367at 1551.450 kb on + strand, within Psyr_1367at 1551.450 kb on + strand, within Psyr_1367at 1551.451 kb on - strand, within Psyr_1367at 1551.451 kb on - strand, within Psyr_1367at 1551.451 kb on - strand, within Psyr_1367at 1551.489 kb on - strandat 1551.634 kb on - strandat 1551.634 kb on - strandat 1551.643 kb on + strandat 1551.643 kb on + strandat 1551.643 kb on + strandat 1551.644 kb on - strandat 1551.644 kb on - strandat 1551.644 kb on - strandat 1551.644 kb on - strandat 1551.644 kb on - strandat 1551.655 kb on + strandat 1551.656 kb on - strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.657 kb on + strandat 1551.658 kb on - strandat 1551.658 kb on - strandat 1551.658 kb on - strandat 1551.658 kb on - strandat 1551.658 kb on - strandat 1551.696 kb on - strandat 1551.783 kb on + strand, within Psyr_1368at 1551.783 kb on + strand, within Psyr_1368at 1551.783 kb on + strand, within Psyr_1368at 1551.783 kb on + strand, within Psyr_1368at 1551.783 kb on + strand, within Psyr_1368at 1551.784 kb on - strand, within Psyr_1368at 1551.784 kb on - strand, within Psyr_1368at 1551.828 kb on + strand, within Psyr_1368at 1551.828 kb on + strand, within Psyr_1368at 1551.828 kb on + strand, within Psyr_1368at 1551.828 kb on + strand, within Psyr_1368at 1551.829 kb on - strand, within Psyr_1368at 1551.929 kb on + strand, within Psyr_1368at 1552.003 kb on - strand, within Psyr_1368at 1552.026 kb on + strand, within Psyr_1368at 1552.027 kb on - strand, within Psyr_1368at 1552.053 kb on + strand, within Psyr_1368at 1552.053 kb on + strand, within Psyr_1368at 1552.115 kb on + strand, within Psyr_1368at 1552.255 kb on - strand, within Psyr_1368at 1552.461 kb on + strandat 1552.461 kb on + strandat 1552.461 kb on + strandat 1552.462 kb on - strandat 1552.462 kb on - strandat 1552.462 kb on - strandat 1552.543 kb on + strandat 1553.084 kb on - strandat 1553.275 kb on + strand, within Psyr_1370

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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1,550,736 + Psyr_1367 0.24 +0.2
1,550,817 - Psyr_1367 0.31 +0.1
1,550,817 - Psyr_1367 0.31 +0.7
1,550,817 - Psyr_1367 0.31 -0.0
1,550,853 + Psyr_1367 0.34 -1.0
1,550,877 + Psyr_1367 0.36 -0.2
1,550,904 + Psyr_1367 0.39 -2.0
1,550,905 - Psyr_1367 0.39 -0.6
1,550,911 + Psyr_1367 0.39 -0.0
1,550,912 - Psyr_1367 0.40 -0.8
1,550,912 - Psyr_1367 0.40 -0.1
1,550,912 - Psyr_1367 0.40 -1.4
1,551,450 + Psyr_1367 0.88 +1.1
1,551,450 + Psyr_1367 0.88 +0.7
1,551,450 + Psyr_1367 0.88 -0.3
1,551,450 + Psyr_1367 0.88 +0.1
1,551,450 + Psyr_1367 0.88 -0.8
1,551,451 - Psyr_1367 0.88 -2.4
1,551,451 - Psyr_1367 0.88 -1.0
1,551,451 - Psyr_1367 0.88 -1.7
1,551,489 - -0.6
1,551,634 - +0.1
1,551,634 - +0.3
1,551,643 + -0.1
1,551,643 + -0.2
1,551,643 + -0.5
1,551,644 - +0.0
1,551,644 - +0.6
1,551,644 - +0.5
1,551,644 - -0.2
1,551,644 - +0.1
1,551,655 + -0.2
1,551,656 - +0.2
1,551,657 + +0.2
1,551,657 + -0.3
1,551,657 + +0.1
1,551,657 + +0.4
1,551,657 + -0.4
1,551,657 + +0.1
1,551,657 + -0.2
1,551,658 - -0.0
1,551,658 - +0.1
1,551,658 - -1.6
1,551,658 - +1.3
1,551,658 - -0.5
1,551,696 - +0.4
1,551,783 + Psyr_1368 0.12 -1.0
1,551,783 + Psyr_1368 0.12 -0.3
1,551,783 + Psyr_1368 0.12 -0.1
1,551,783 + Psyr_1368 0.12 +0.4
1,551,783 + Psyr_1368 0.12 +0.6
1,551,784 - Psyr_1368 0.12 +0.3
1,551,784 - Psyr_1368 0.12 +1.8
1,551,828 + Psyr_1368 0.17 +0.3
1,551,828 + Psyr_1368 0.17 +0.3
1,551,828 + Psyr_1368 0.17 -0.2
1,551,828 + Psyr_1368 0.17 +1.2
1,551,829 - Psyr_1368 0.17 +0.1
1,551,929 + Psyr_1368 0.29 +0.7
1,552,003 - Psyr_1368 0.38 +0.7
1,552,026 + Psyr_1368 0.41 +0.8
1,552,027 - Psyr_1368 0.41 -1.2
1,552,053 + Psyr_1368 0.44 -0.5
1,552,053 + Psyr_1368 0.44 -0.1
1,552,115 + Psyr_1368 0.51 +2.5
1,552,255 - Psyr_1368 0.68 +2.4
1,552,461 + -0.6
1,552,461 + +0.0
1,552,461 + +0.6
1,552,462 - +0.3
1,552,462 - -1.1
1,552,462 - +0.5
1,552,543 + -0.3
1,553,084 - +0.0
1,553,275 + Psyr_1370 0.21 -0.4

Or see this region's nucleotide sequence