Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0405

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0403 and Psyr_0404 overlap by 1 nucleotidesPsyr_0404 and Psyr_0405 overlap by 4 nucleotidesPsyr_0405 and Psyr_0406 overlap by 4 nucleotidesPsyr_0406 and Psyr_0407 overlap by 4 nucleotides Psyr_0403: Psyr_0403 - Type IV pilus assembly protein PilM, at 433,624 to 434,688 _0403 Psyr_0404: Psyr_0404 - Fimbrial assembly, at 434,688 to 435,263 _0404 Psyr_0405: Psyr_0405 - Pilus assembly protein, PilO, at 435,260 to 435,883 _0405 Psyr_0406: Psyr_0406 - Pilus assembly protein, PilQ, at 435,880 to 436,407 _0406 Psyr_0407: Psyr_0407 - type II and III secretion system protein:NolW-like protein:NolW-like protein, at 436,404 to 438,560 _0407 Position (kb) 435 436Strain fitness (log2 ratio) -2 -1 0 1at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.390 kb on - strand, within Psyr_0403at 434.476 kb on + strand, within Psyr_0403at 434.476 kb on + strand, within Psyr_0403at 434.476 kb on + strand, within Psyr_0403at 434.477 kb on - strand, within Psyr_0403at 434.477 kb on - strand, within Psyr_0403at 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.811 kb on + strand, within Psyr_0404at 434.812 kb on - strand, within Psyr_0404at 434.812 kb on - strand, within Psyr_0404at 435.027 kb on + strand, within Psyr_0404at 435.027 kb on + strand, within Psyr_0404at 435.028 kb on - strand, within Psyr_0404at 435.028 kb on - strand, within Psyr_0404at 435.030 kb on + strand, within Psyr_0404at 435.030 kb on + strand, within Psyr_0404at 435.030 kb on + strand, within Psyr_0404at 435.113 kb on + strand, within Psyr_0404at 435.114 kb on - strand, within Psyr_0404at 435.114 kb on - strand, within Psyr_0404at 435.214 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.398 kb on + strand, within Psyr_0405at 435.512 kb on + strand, within Psyr_0405at 435.512 kb on + strand, within Psyr_0405at 435.513 kb on - strand, within Psyr_0405at 435.513 kb on - strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.681 kb on + strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.696 kb on + strand, within Psyr_0405at 435.857 kb on + strandat 435.857 kb on + strandat 435.858 kb on - strandat 436.034 kb on - strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406at 436.276 kb on + strand, within Psyr_0406at 436.276 kb on + strand, within Psyr_0406at 436.277 kb on - strand, within Psyr_0406at 436.277 kb on - strand, within Psyr_0406at 436.277 kb on - strand, within Psyr_0406at 436.277 kb on - strand, within Psyr_0406at 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.424 kb on + strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.425 kb on - strandat 436.433 kb on + strandat 436.433 kb on + strandat 436.434 kb on - strandat 436.729 kb on + strand, within Psyr_0407at 436.730 kb on - strand, within Psyr_0407at 436.783 kb on - strand, within Psyr_0407

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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434,272 + Psyr_0403 0.61 -0.3
434,272 + Psyr_0403 0.61 +0.8
434,272 + Psyr_0403 0.61 +0.9
434,272 + Psyr_0403 0.61 -0.5
434,273 - Psyr_0403 0.61 -0.2
434,273 - Psyr_0403 0.61 +0.1
434,273 - Psyr_0403 0.61 -1.4
434,273 - Psyr_0403 0.61 -0.5
434,273 - Psyr_0403 0.61 +1.0
434,390 - Psyr_0403 0.72 +0.4
434,476 + Psyr_0403 0.80 +0.4
434,476 + Psyr_0403 0.80 +0.4
434,476 + Psyr_0403 0.80 +0.2
434,477 - Psyr_0403 0.80 -1.3
434,477 - Psyr_0403 0.80 -1.1
434,704 + +0.1
434,704 + +0.0
434,704 + +0.3
434,704 + -0.3
434,704 + -0.2
434,704 + +0.9
434,705 - -0.8
434,705 - +0.2
434,705 - -0.3
434,705 - +0.3
434,705 - +0.9
434,705 - -1.5
434,705 - -0.3
434,811 + Psyr_0404 0.21 +1.3
434,812 - Psyr_0404 0.22 +0.5
434,812 - Psyr_0404 0.22 +0.5
435,027 + Psyr_0404 0.59 -0.6
435,027 + Psyr_0404 0.59 +0.1
435,028 - Psyr_0404 0.59 +0.6
435,028 - Psyr_0404 0.59 -0.2
435,030 + Psyr_0404 0.59 -1.2
435,030 + Psyr_0404 0.59 +0.1
435,030 + Psyr_0404 0.59 +0.4
435,113 + Psyr_0404 0.74 -0.3
435,114 - Psyr_0404 0.74 -0.4
435,114 - Psyr_0404 0.74 +0.1
435,214 + -0.5
435,265 + +0.3
435,265 + -0.6
435,265 + +0.1
435,265 + +0.3
435,265 + -0.0
435,265 + +0.1
435,265 + -1.2
435,266 - +1.1
435,266 - -0.1
435,266 - -0.7
435,266 - -0.0
435,398 + Psyr_0405 0.22 +0.4
435,512 + Psyr_0405 0.40 -1.1
435,512 + Psyr_0405 0.40 +0.0
435,513 - Psyr_0405 0.41 -1.9
435,513 - Psyr_0405 0.41 -0.7
435,680 + Psyr_0405 0.67 -0.1
435,680 + Psyr_0405 0.67 -0.3
435,680 + Psyr_0405 0.67 -0.3
435,681 + Psyr_0405 0.67 +0.4
435,681 - Psyr_0405 0.67 -0.4
435,681 - Psyr_0405 0.67 +0.0
435,681 - Psyr_0405 0.67 -0.6
435,681 - Psyr_0405 0.67 -0.0
435,681 - Psyr_0405 0.67 -0.6
435,681 - Psyr_0405 0.67 -0.7
435,681 - Psyr_0405 0.67 -2.2
435,681 - Psyr_0405 0.67 -0.6
435,681 - Psyr_0405 0.67 +0.4
435,696 + Psyr_0405 0.70 -0.9
435,857 + -0.5
435,857 + +0.7
435,858 - -0.8
436,034 - Psyr_0406 0.29 -1.4
436,048 + Psyr_0406 0.32 +0.3
436,048 + Psyr_0406 0.32 -0.2
436,048 + Psyr_0406 0.32 -1.3
436,049 - Psyr_0406 0.32 +0.0
436,049 - Psyr_0406 0.32 +0.5
436,049 - Psyr_0406 0.32 -2.0
436,276 + Psyr_0406 0.75 -0.5
436,276 + Psyr_0406 0.75 -0.3
436,277 - Psyr_0406 0.75 -0.1
436,277 - Psyr_0406 0.75 +0.4
436,277 - Psyr_0406 0.75 -1.6
436,277 - Psyr_0406 0.75 +0.3
436,424 + +0.2
436,424 + +0.3
436,424 + +0.1
436,424 + +0.3
436,424 + -1.4
436,424 + -0.0
436,424 + -0.3
436,424 + +0.6
436,424 + -1.6
436,425 - +0.0
436,425 - -1.0
436,425 - +0.7
436,425 - -1.3
436,425 - -0.8
436,425 - +0.4
436,425 - -0.1
436,433 + -0.2
436,433 + +0.8
436,434 - +0.2
436,729 + Psyr_0407 0.15 -1.8
436,730 - Psyr_0407 0.15 +1.0
436,783 - Psyr_0407 0.18 +1.1

Or see this region's nucleotide sequence