Strain Fitness in Escherichia coli BW25113 around b2177

Experiment: LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrtn and yejA are separated by 81 nucleotidesyejA and yejB are separated by 0 nucleotides b2176: rtn - hypothetical protein (NCBI), at 2,268,748 to 2,270,304 rtn b2177: yejA - orf, hypothetical protein (VIMSS), at 2,270,386 to 2,272,200 yejA b2178: yejB - predicted oligopeptide transporter subunit (NCBI), at 2,272,201 to 2,273,295 yejB Position (kb) 2270 2271 2272 2273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2269.415 kb on - strand, within rtnat 2269.425 kb on - strand, within rtnat 2269.447 kb on - strand, within rtnat 2269.447 kb on - strand, within rtnat 2269.511 kb on - strand, within rtnat 2269.511 kb on - strand, within rtnat 2269.516 kb on - strand, within rtnat 2269.630 kb on - strand, within rtnat 2269.727 kb on + strand, within rtnat 2269.739 kb on + strand, within rtnat 2269.753 kb on - strand, within rtnat 2269.998 kb on + strand, within rtnat 2270.030 kb on - strand, within rtnat 2270.185 kb on - strandat 2270.329 kb on - strandat 2270.363 kb on + strandat 2270.421 kb on + strandat 2270.421 kb on + strandat 2270.429 kb on - strandat 2270.439 kb on + strandat 2270.440 kb on + strandat 2270.440 kb on + strandat 2270.591 kb on + strand, within yejAat 2270.639 kb on - strand, within yejAat 2270.639 kb on - strand, within yejAat 2270.845 kb on + strand, within yejAat 2270.852 kb on - strand, within yejAat 2271.011 kb on + strand, within yejAat 2271.016 kb on + strand, within yejAat 2271.058 kb on + strand, within yejAat 2271.058 kb on + strand, within yejAat 2271.085 kb on + strand, within yejAat 2271.085 kb on + strand, within yejAat 2271.210 kb on - strand, within yejAat 2271.210 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.240 kb on - strand, within yejAat 2271.295 kb on + strand, within yejAat 2271.300 kb on + strand, within yejAat 2271.308 kb on - strand, within yejAat 2271.308 kb on - strand, within yejAat 2271.363 kb on + strand, within yejAat 2271.561 kb on + strand, within yejAat 2271.574 kb on + strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.641 kb on - strand, within yejAat 2271.657 kb on + strand, within yejAat 2271.707 kb on + strand, within yejAat 2271.729 kb on - strand, within yejAat 2271.730 kb on + strand, within yejAat 2271.730 kb on + strand, within yejAat 2271.826 kb on - strand, within yejAat 2271.871 kb on - strand, within yejAat 2271.925 kb on + strand, within yejAat 2272.009 kb on + strand, within yejAat 2272.117 kb on + strandat 2272.126 kb on - strandat 2272.126 kb on - strandat 2272.152 kb on + strandat 2272.152 kb on + strandat 2272.255 kb on - strandat 2272.348 kb on + strand, within yejBat 2272.348 kb on + strand, within yejBat 2272.385 kb on - strand, within yejBat 2272.583 kb on - strand, within yejBat 2272.597 kb on + strand, within yejBat 2272.599 kb on + strand, within yejBat 2272.637 kb on + strand, within yejBat 2272.686 kb on - strand, within yejBat 2272.686 kb on - strand, within yejBat 2272.970 kb on + strand, within yejBat 2273.143 kb on + strand, within yejBat 2273.198 kb on - strandat 2273.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM
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2,269,415 - rtn b2176 0.43 +0.6
2,269,425 - rtn b2176 0.43 -0.8
2,269,447 - rtn b2176 0.45 -0.4
2,269,447 - rtn b2176 0.45 -3.1
2,269,511 - rtn b2176 0.49 -0.3
2,269,511 - rtn b2176 0.49 +0.4
2,269,516 - rtn b2176 0.49 +0.9
2,269,630 - rtn b2176 0.57 -0.7
2,269,727 + rtn b2176 0.63 +0.2
2,269,739 + rtn b2176 0.64 -0.4
2,269,753 - rtn b2176 0.65 +0.2
2,269,998 + rtn b2176 0.80 +0.8
2,270,030 - rtn b2176 0.82 -0.1
2,270,185 - -0.4
2,270,329 - -1.3
2,270,363 + +0.3
2,270,421 + +0.2
2,270,421 + +0.4
2,270,429 - +0.6
2,270,439 + -0.3
2,270,440 + +0.3
2,270,440 + +1.5
2,270,591 + yejA b2177 0.11 -0.4
2,270,639 - yejA b2177 0.14 +1.1
2,270,639 - yejA b2177 0.14 +0.9
2,270,845 + yejA b2177 0.25 -1.6
2,270,852 - yejA b2177 0.26 -0.5
2,271,011 + yejA b2177 0.34 +0.1
2,271,016 + yejA b2177 0.35 -0.5
2,271,058 + yejA b2177 0.37 +0.8
2,271,058 + yejA b2177 0.37 +0.6
2,271,085 + yejA b2177 0.39 +0.4
2,271,085 + yejA b2177 0.39 -1.1
2,271,210 - yejA b2177 0.45 -0.5
2,271,210 - yejA b2177 0.45 +0.6
2,271,239 - yejA b2177 0.47 +1.0
2,271,239 - yejA b2177 0.47 +0.5
2,271,239 - yejA b2177 0.47 +0.3
2,271,239 - yejA b2177 0.47 -0.1
2,271,240 - yejA b2177 0.47 +2.3
2,271,295 + yejA b2177 0.50 +0.5
2,271,300 + yejA b2177 0.50 -0.5
2,271,308 - yejA b2177 0.51 -0.5
2,271,308 - yejA b2177 0.51 -1.1
2,271,363 + yejA b2177 0.54 +0.0
2,271,561 + yejA b2177 0.65 +1.0
2,271,574 + yejA b2177 0.65 +1.3
2,271,639 - yejA b2177 0.69 -0.7
2,271,639 - yejA b2177 0.69 -0.1
2,271,639 - yejA b2177 0.69 +0.3
2,271,639 - yejA b2177 0.69 -0.0
2,271,639 - yejA b2177 0.69 -0.2
2,271,641 - yejA b2177 0.69 -0.3
2,271,657 + yejA b2177 0.70 +1.9
2,271,707 + yejA b2177 0.73 +0.2
2,271,729 - yejA b2177 0.74 +3.4
2,271,730 + yejA b2177 0.74 -1.2
2,271,730 + yejA b2177 0.74 +1.3
2,271,826 - yejA b2177 0.79 -1.1
2,271,871 - yejA b2177 0.82 +0.0
2,271,925 + yejA b2177 0.85 +0.4
2,272,009 + yejA b2177 0.89 +0.7
2,272,117 + -0.1
2,272,126 - +0.9
2,272,126 - -0.5
2,272,152 + -0.9
2,272,152 + -1.1
2,272,255 - -0.1
2,272,348 + yejB b2178 0.13 -0.7
2,272,348 + yejB b2178 0.13 +0.9
2,272,385 - yejB b2178 0.17 +0.5
2,272,583 - yejB b2178 0.35 +0.5
2,272,597 + yejB b2178 0.36 +0.0
2,272,599 + yejB b2178 0.36 +0.1
2,272,637 + yejB b2178 0.40 -0.1
2,272,686 - yejB b2178 0.44 -0.1
2,272,686 - yejB b2178 0.44 +0.1
2,272,970 + yejB b2178 0.70 -0.1
2,273,143 + yejB b2178 0.86 -2.7
2,273,198 - -1.1
2,273,198 - -0.7

Or see this region's nucleotide sequence