Experiment: Growth on radish seeds for 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27735 and PS417_27740 are separated by 90 nucleotides PS417_27740 and PS417_27745 are separated by 150 nucleotides
PS417_27735: PS417_27735 - phospholipase, at 5,981,368 to 5,982,936
_27735
PS417_27740: PS417_27740 - MFS transporter, at 5,983,027 to 5,984,169
_27740
PS417_27745: PS417_27745 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) <small>(from data)</small>, at 5,984,320 to 5,985,813
_27745
Position (kb) 5983
5984
5985 Strain fitness (log2 ratio) -1
0
1 at 5982.079 kb on - strand, within PS417_27735 at 5982.079 kb on - strand, within PS417_27735 at 5982.181 kb on + strand at 5982.181 kb on + strand, within PS417_27735 at 5982.181 kb on + strand, within PS417_27735 at 5982.182 kb on - strand, within PS417_27735 at 5982.395 kb on - strand, within PS417_27735 at 5982.790 kb on + strand at 5982.791 kb on - strand at 5982.935 kb on - strand at 5983.029 kb on - strand at 5983.384 kb on - strand, within PS417_27740 at 5983.397 kb on + strand, within PS417_27740 at 5983.398 kb on - strand, within PS417_27740 at 5983.502 kb on + strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.503 kb on - strand, within PS417_27740 at 5983.669 kb on + strand, within PS417_27740 at 5983.670 kb on - strand, within PS417_27740 at 5983.701 kb on - strand, within PS417_27740 at 5983.701 kb on - strand, within PS417_27740 at 5983.701 kb on - strand, within PS417_27740 at 5983.760 kb on + strand, within PS417_27740 at 5983.761 kb on - strand, within PS417_27740 at 5983.761 kb on - strand, within PS417_27740 at 5983.772 kb on + strand, within PS417_27740 at 5983.772 kb on + strand, within PS417_27740 at 5983.772 kb on + strand, within PS417_27740 at 5983.844 kb on - strand, within PS417_27740 at 5983.879 kb on + strand, within PS417_27740 at 5984.272 kb on - strand at 5984.322 kb on - strand at 5984.354 kb on + strand at 5984.355 kb on - strand at 5984.441 kb on + strand at 5984.534 kb on + strand, within PS417_27745 at 5984.669 kb on + strand, within PS417_27745 at 5984.670 kb on - strand, within PS417_27745 at 5984.670 kb on - strand, within PS417_27745 at 5984.670 kb on - strand, within PS417_27745 at 5984.670 kb on - strand, within PS417_27745 at 5984.670 kb on - strand, within PS417_27745 at 5984.747 kb on + strand, within PS417_27745 at 5984.748 kb on - strand, within PS417_27745 at 5984.866 kb on - strand, within PS417_27745
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours remove 5,982,079 - PS417_27735 0.45 +0.0 5,982,079 - PS417_27735 0.45 -0.9 5,982,181 + +1.6 5,982,181 + PS417_27735 0.52 -0.8 5,982,181 + PS417_27735 0.52 +0.8 5,982,182 - PS417_27735 0.52 +1.2 5,982,395 - PS417_27735 0.65 +1.0 5,982,790 + +0.6 5,982,791 - +0.9 5,982,935 - -0.0 5,983,029 - -0.5 5,983,384 - PS417_27740 0.31 -0.2 5,983,397 + PS417_27740 0.32 +0.4 5,983,398 - PS417_27740 0.32 +1.6 5,983,502 + PS417_27740 0.42 -0.1 5,983,503 - PS417_27740 0.42 +0.2 5,983,503 - PS417_27740 0.42 +1.6 5,983,503 - PS417_27740 0.42 +0.6 5,983,503 - PS417_27740 0.42 +0.2 5,983,503 - PS417_27740 0.42 +1.6 5,983,503 - PS417_27740 0.42 +0.5 5,983,669 + PS417_27740 0.56 -0.0 5,983,670 - PS417_27740 0.56 +0.5 5,983,701 - PS417_27740 0.59 +1.6 5,983,701 - PS417_27740 0.59 +0.6 5,983,701 - PS417_27740 0.59 -0.1 5,983,760 + PS417_27740 0.64 -0.0 5,983,761 - PS417_27740 0.64 +0.4 5,983,761 - PS417_27740 0.64 +0.7 5,983,772 + PS417_27740 0.65 -0.2 5,983,772 + PS417_27740 0.65 -0.0 5,983,772 + PS417_27740 0.65 +1.2 5,983,844 - PS417_27740 0.71 -0.4 5,983,879 + PS417_27740 0.75 -0.2 5,984,272 - +0.3 5,984,322 - -0.6 5,984,354 + -1.1 5,984,355 - -0.0 5,984,441 + +0.6 5,984,534 + PS417_27745 0.14 -0.0 5,984,669 + PS417_27745 0.23 +0.6 5,984,670 - PS417_27745 0.23 -0.0 5,984,670 - PS417_27745 0.23 -0.9 5,984,670 - PS417_27745 0.23 -0.7 5,984,670 - PS417_27745 0.23 -0.0 5,984,670 - PS417_27745 0.23 +1.0 5,984,747 + PS417_27745 0.29 +0.1 5,984,748 - PS417_27745 0.29 +0.2 5,984,866 - PS417_27745 0.37 -1.2
Or see this region's nucleotide sequence