Strain Fitness in Pseudomonas simiae WCS417 around PS417_26025

Experiment: Growth on radish seeds for 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26020 and PS417_26025 are separated by 194 nucleotidesPS417_26025 and PS417_26030 are separated by 102 nucleotides PS417_26020: PS417_26020 - transcriptional initiation protein Tat, at 5,621,374 to 5,623,272 _26020 PS417_26025: PS417_26025 - serine/threonine protein kinase, at 5,623,467 to 5,624,441 _26025 PS417_26030: PS417_26030 - chloramphenical resistance permease RarD, at 5,624,544 to 5,625,428 _26030 Position (kb) 5623 5624 5625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5622.484 kb on + strand, within PS417_26020at 5622.484 kb on + strand, within PS417_26020at 5622.484 kb on + strand, within PS417_26020at 5622.484 kb on + strand, within PS417_26020at 5622.485 kb on - strand, within PS417_26020at 5622.485 kb on - strand, within PS417_26020at 5622.485 kb on - strand, within PS417_26020at 5623.000 kb on + strand, within PS417_26020at 5623.119 kb on + strandat 5623.119 kb on + strandat 5623.119 kb on + strandat 5623.152 kb on - strandat 5623.273 kb on + strandat 5623.274 kb on - strandat 5623.274 kb on - strandat 5623.274 kb on - strandat 5623.335 kb on + strandat 5623.336 kb on - strandat 5623.344 kb on + strandat 5623.344 kb on + strandat 5623.344 kb on + strandat 5623.344 kb on + strandat 5623.345 kb on - strandat 5623.345 kb on - strandat 5623.345 kb on - strandat 5623.345 kb on - strandat 5623.356 kb on + strandat 5623.401 kb on + strandat 5623.401 kb on + strandat 5623.401 kb on + strandat 5623.401 kb on + strandat 5623.402 kb on - strandat 5623.402 kb on - strandat 5623.402 kb on - strandat 5623.402 kb on - strandat 5623.402 kb on - strandat 5623.402 kb on - strandat 5623.405 kb on + strandat 5623.405 kb on + strandat 5623.405 kb on + strandat 5623.405 kb on + strandat 5623.405 kb on + strandat 5623.405 kb on + strandat 5623.406 kb on - strandat 5623.406 kb on - strandat 5623.406 kb on - strandat 5623.406 kb on - strandat 5623.406 kb on - strandat 5623.566 kb on + strand, within PS417_26025at 5623.582 kb on - strand, within PS417_26025at 5623.626 kb on + strand, within PS417_26025at 5623.627 kb on - strand, within PS417_26025at 5623.676 kb on + strand, within PS417_26025at 5623.825 kb on - strandat 5623.978 kb on - strand, within PS417_26025at 5624.022 kb on + strand, within PS417_26025at 5624.022 kb on + strand, within PS417_26025at 5624.022 kb on + strand, within PS417_26025at 5624.022 kb on + strand, within PS417_26025at 5624.022 kb on + strand, within PS417_26025at 5624.023 kb on - strand, within PS417_26025at 5624.023 kb on - strand, within PS417_26025at 5624.023 kb on - strand, within PS417_26025at 5624.023 kb on - strand, within PS417_26025at 5624.292 kb on + strand, within PS417_26025at 5624.293 kb on - strand, within PS417_26025at 5624.571 kb on + strandat 5624.572 kb on - strandat 5624.592 kb on + strandat 5624.592 kb on + strandat 5624.592 kb on + strandat 5624.593 kb on - strandat 5624.593 kb on - strandat 5624.619 kb on + strandat 5624.620 kb on - strandat 5624.663 kb on - strand, within PS417_26030at 5624.811 kb on + strand, within PS417_26030at 5624.811 kb on + strand, within PS417_26030at 5624.811 kb on + strand, within PS417_26030at 5624.811 kb on + strand, within PS417_26030at 5624.812 kb on - strand, within PS417_26030at 5624.812 kb on - strand, within PS417_26030at 5624.812 kb on - strandat 5624.812 kb on - strand, within PS417_26030at 5624.860 kb on - strand, within PS417_26030at 5624.862 kb on + strand, within PS417_26030at 5624.862 kb on + strand, within PS417_26030at 5624.862 kb on + strand, within PS417_26030at 5624.862 kb on + strand, within PS417_26030at 5624.862 kb on + strand, within PS417_26030at 5624.863 kb on - strand, within PS417_26030at 5624.863 kb on - strand, within PS417_26030at 5624.863 kb on - strand, within PS417_26030at 5624.863 kb on - strand, within PS417_26030at 5625.258 kb on + strand, within PS417_26030at 5625.401 kb on + strandat 5625.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours
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5,622,484 + PS417_26020 0.58 -0.3
5,622,484 + PS417_26020 0.58 +0.4
5,622,484 + PS417_26020 0.58 -0.2
5,622,484 + PS417_26020 0.58 -0.0
5,622,485 - PS417_26020 0.59 +1.2
5,622,485 - PS417_26020 0.59 +0.6
5,622,485 - PS417_26020 0.59 -1.8
5,623,000 + PS417_26020 0.86 -0.1
5,623,119 + -1.2
5,623,119 + -0.6
5,623,119 + +0.5
5,623,152 - -0.1
5,623,273 + +0.5
5,623,274 - -0.2
5,623,274 - -0.0
5,623,274 - -0.2
5,623,335 + +3.4
5,623,336 - -0.2
5,623,344 + +0.1
5,623,344 + +0.7
5,623,344 + +1.1
5,623,344 + -0.2
5,623,345 - -0.5
5,623,345 - +1.6
5,623,345 - +0.2
5,623,345 - +1.0
5,623,356 + -0.1
5,623,401 + -0.4
5,623,401 + +0.6
5,623,401 + +1.4
5,623,401 + +2.1
5,623,402 - -0.2
5,623,402 - +2.0
5,623,402 - +1.4
5,623,402 - -0.3
5,623,402 - +0.9
5,623,402 - -0.4
5,623,405 + +1.0
5,623,405 + -2.0
5,623,405 + +2.7
5,623,405 + +0.8
5,623,405 + -0.3
5,623,405 + -1.1
5,623,406 - -0.7
5,623,406 - +0.8
5,623,406 - +0.1
5,623,406 - +0.9
5,623,406 - -0.5
5,623,566 + PS417_26025 0.10 +1.1
5,623,582 - PS417_26025 0.12 +0.0
5,623,626 + PS417_26025 0.16 +0.1
5,623,627 - PS417_26025 0.16 -0.2
5,623,676 + PS417_26025 0.21 -1.3
5,623,825 - +0.4
5,623,978 - PS417_26025 0.52 -0.2
5,624,022 + PS417_26025 0.57 +2.5
5,624,022 + PS417_26025 0.57 +0.2
5,624,022 + PS417_26025 0.57 -0.0
5,624,022 + PS417_26025 0.57 +1.1
5,624,022 + PS417_26025 0.57 +0.4
5,624,023 - PS417_26025 0.57 +0.7
5,624,023 - PS417_26025 0.57 +1.4
5,624,023 - PS417_26025 0.57 -0.2
5,624,023 - PS417_26025 0.57 -0.6
5,624,292 + PS417_26025 0.85 -0.3
5,624,293 - PS417_26025 0.85 +1.2
5,624,571 + +0.4
5,624,572 - -0.2
5,624,592 + -0.0
5,624,592 + +0.4
5,624,592 + +0.3
5,624,593 - -0.0
5,624,593 - -0.8
5,624,619 + +0.4
5,624,620 - +0.4
5,624,663 - PS417_26030 0.13 -0.5
5,624,811 + PS417_26030 0.30 -0.3
5,624,811 + PS417_26030 0.30 -1.6
5,624,811 + PS417_26030 0.30 +0.0
5,624,811 + PS417_26030 0.30 -0.9
5,624,812 - PS417_26030 0.30 -0.3
5,624,812 - PS417_26030 0.30 -0.6
5,624,812 - +1.4
5,624,812 - PS417_26030 0.30 -0.6
5,624,860 - PS417_26030 0.36 -1.2
5,624,862 + PS417_26030 0.36 -0.8
5,624,862 + PS417_26030 0.36 +0.6
5,624,862 + PS417_26030 0.36 +0.6
5,624,862 + PS417_26030 0.36 -0.6
5,624,862 + PS417_26030 0.36 +0.4
5,624,863 - PS417_26030 0.36 +0.3
5,624,863 - PS417_26030 0.36 +0.4
5,624,863 - PS417_26030 0.36 -0.8
5,624,863 - PS417_26030 0.36 -0.4
5,625,258 + PS417_26030 0.81 +0.1
5,625,401 + +0.1
5,625,439 + +1.4

Or see this region's nucleotide sequence