Experiment: Growth on radish seeds for 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25775 and PS417_25780 are separated by 71 nucleotides PS417_25780 and PS417_25785 are separated by 1 nucleotides PS417_25785 and PS417_25790 overlap by 4 nucleotides
PS417_25775: PS417_25775 - lipoprotein, at 5,565,103 to 5,566,077
_25775
PS417_25780: PS417_25780 - molecular chaperone DnaJ, at 5,566,149 to 5,566,916
_25780
PS417_25785: PS417_25785 - mannose-1-phosphate guanylyltransferase, at 5,566,918 to 5,567,592
_25785
PS417_25790: PS417_25790 - aminoglycoside phosphotransferase, at 5,567,589 to 5,568,614
_25790
Position (kb) 5566
5567 Strain fitness (log2 ratio) -1
0
1
2 at 5565.372 kb on + strand, within PS417_25775 at 5565.377 kb on + strand, within PS417_25775 at 5565.417 kb on + strand, within PS417_25775 at 5565.418 kb on - strand, within PS417_25775 at 5565.492 kb on + strand at 5565.493 kb on - strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.726 kb on - strand at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.895 kb on + strand, within PS417_25775 at 5565.896 kb on - strand, within PS417_25775 at 5565.971 kb on - strand, within PS417_25775 at 5566.031 kb on - strand at 5566.127 kb on + strand at 5566.183 kb on + strand at 5566.184 kb on - strand at 5566.205 kb on + strand at 5566.357 kb on + strand, within PS417_25780 at 5566.362 kb on - strand, within PS417_25780 at 5566.527 kb on + strand, within PS417_25780 at 5566.566 kb on + strand, within PS417_25780 at 5566.567 kb on - strand, within PS417_25780 at 5566.570 kb on + strand, within PS417_25780 at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.677 kb on - strand at 5567.678 kb on + strand at 5567.679 kb on - strand at 5567.679 kb on - strand at 5567.680 kb on + strand at 5567.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours remove 5,565,372 + PS417_25775 0.28 +1.9 5,565,377 + PS417_25775 0.28 +0.3 5,565,417 + PS417_25775 0.32 +0.5 5,565,418 - PS417_25775 0.32 +0.1 5,565,492 + +1.3 5,565,493 - PS417_25775 0.40 +1.9 5,565,509 + PS417_25775 0.42 +0.6 5,565,509 + PS417_25775 0.42 +1.3 5,565,726 - +1.3 5,565,849 - PS417_25775 0.77 +1.3 5,565,849 - PS417_25775 0.77 +0.3 5,565,849 - PS417_25775 0.77 -0.3 5,565,895 + PS417_25775 0.81 +1.2 5,565,896 - PS417_25775 0.81 +0.1 5,565,971 - PS417_25775 0.89 +0.0 5,566,031 - -0.7 5,566,127 + +0.3 5,566,183 + -1.5 5,566,184 - +1.1 5,566,205 + -0.2 5,566,357 + PS417_25780 0.27 +0.3 5,566,362 - PS417_25780 0.28 -1.5 5,566,527 + PS417_25780 0.49 +0.9 5,566,566 + PS417_25780 0.54 -0.7 5,566,567 - PS417_25780 0.54 -0.4 5,566,570 + PS417_25780 0.55 -0.7 5,567,593 - +0.3 5,567,593 - +0.3 5,567,593 - -0.7 5,567,593 - +0.3 5,567,677 - -1.0 5,567,678 + +0.9 5,567,679 - -0.2 5,567,679 - +0.0 5,567,680 + -0.4 5,567,680 + -0.5
Or see this region's nucleotide sequence