Experiment: Growth on radish seeds for 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21530 and PS417_21535 overlap by 4 nucleotides
PS417_21530: PS417_21530 - histidine kinase, at 4,674,177 to 4,675,787
_21530
PS417_21535: PS417_21535 - chemotaxis protein CheY, at 4,675,784 to 4,676,509
_21535
Position (kb) 4675
4676
4677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4674.882 kb on + strand, within PS417_21530 at 4674.882 kb on + strand, within PS417_21530 at 4674.883 kb on - strand, within PS417_21530 at 4674.883 kb on - strand, within PS417_21530 at 4674.883 kb on - strand, within PS417_21530 at 4674.883 kb on - strand, within PS417_21530 at 4675.036 kb on + strand, within PS417_21530 at 4675.036 kb on + strand, within PS417_21530 at 4675.036 kb on + strand, within PS417_21530 at 4675.036 kb on + strand, within PS417_21530 at 4675.115 kb on - strand, within PS417_21530 at 4675.302 kb on + strand, within PS417_21530 at 4675.302 kb on + strand, within PS417_21530 at 4675.303 kb on - strand, within PS417_21530 at 4675.303 kb on - strand, within PS417_21530 at 4675.303 kb on - strand, within PS417_21530 at 4675.303 kb on - strand at 4675.366 kb on + strand, within PS417_21530 at 4675.367 kb on - strand, within PS417_21530 at 4675.452 kb on + strand, within PS417_21530 at 4675.762 kb on + strand at 4675.762 kb on + strand at 4675.762 kb on + strand at 4675.762 kb on + strand at 4675.762 kb on + strand at 4675.763 kb on - strand at 4675.763 kb on - strand at 4675.824 kb on + strand at 4675.877 kb on + strand, within PS417_21535 at 4675.901 kb on - strand, within PS417_21535 at 4675.901 kb on - strand, within PS417_21535 at 4676.205 kb on + strand, within PS417_21535 at 4676.205 kb on + strand, within PS417_21535 at 4676.205 kb on + strand, within PS417_21535 at 4676.206 kb on - strand, within PS417_21535 at 4676.439 kb on + strand at 4676.440 kb on - strand at 4676.480 kb on + strand at 4676.486 kb on + strand at 4676.487 kb on - strand at 4676.531 kb on + strand at 4676.531 kb on + strand at 4676.531 kb on + strand at 4676.646 kb on - strand at 4676.681 kb on + strand at 4676.696 kb on + strand at 4676.754 kb on + strand at 4676.755 kb on - strand at 4676.755 kb on - strand at 4676.786 kb on + strand at 4676.787 kb on - strand at 4676.816 kb on + strand at 4676.838 kb on + strand at 4676.846 kb on + strand at 4676.907 kb on + strand at 4676.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours remove 4,674,882 + PS417_21530 0.44 +0.6 4,674,882 + PS417_21530 0.44 -0.1 4,674,883 - PS417_21530 0.44 -0.1 4,674,883 - PS417_21530 0.44 -0.1 4,674,883 - PS417_21530 0.44 -0.1 4,674,883 - PS417_21530 0.44 -0.0 4,675,036 + PS417_21530 0.53 +0.4 4,675,036 + PS417_21530 0.53 -0.3 4,675,036 + PS417_21530 0.53 +0.6 4,675,036 + PS417_21530 0.53 +0.6 4,675,115 - PS417_21530 0.58 -0.6 4,675,302 + PS417_21530 0.70 +0.4 4,675,302 + PS417_21530 0.70 +0.8 4,675,303 - PS417_21530 0.70 +0.9 4,675,303 - PS417_21530 0.70 -0.1 4,675,303 - PS417_21530 0.70 -0.3 4,675,303 - +0.9 4,675,366 + PS417_21530 0.74 -0.1 4,675,367 - PS417_21530 0.74 -0.2 4,675,452 + PS417_21530 0.79 -0.1 4,675,762 + -0.4 4,675,762 + -0.4 4,675,762 + -1.1 4,675,762 + -0.4 4,675,762 + -0.8 4,675,763 - -0.1 4,675,763 - -1.6 4,675,824 + +0.2 4,675,877 + PS417_21535 0.13 +0.0 4,675,901 - PS417_21535 0.16 +0.9 4,675,901 - PS417_21535 0.16 +0.9 4,676,205 + PS417_21535 0.58 -0.2 4,676,205 + PS417_21535 0.58 +3.4 4,676,205 + PS417_21535 0.58 -0.6 4,676,206 - PS417_21535 0.58 -1.1 4,676,439 + +0.6 4,676,440 - -0.8 4,676,480 + +0.9 4,676,486 + -2.9 4,676,487 - +0.3 4,676,531 + -0.1 4,676,531 + +0.0 4,676,531 + -0.7 4,676,646 - -0.4 4,676,681 + +0.9 4,676,696 + -0.4 4,676,754 + -2.4 4,676,755 - -1.4 4,676,755 - +1.3 4,676,786 + -1.3 4,676,787 - -1.1 4,676,816 + -0.1 4,676,838 + -0.7 4,676,846 + +0.2 4,676,907 + +0.9 4,676,943 + +0.5
Or see this region's nucleotide sequence