Experiment: Growth on radish seeds for 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02085 and PS417_02090 overlap by 4 nucleotides PS417_02090 and PS417_02095 overlap by 8 nucleotides PS417_02095 and PS417_02100 overlap by 4 nucleotides PS417_02100 and PS417_02105 overlap by 4 nucleotides PS417_02105 and PS417_02110 are separated by 9 nucleotides
PS417_02085: PS417_02085 - glycosyl transferase, at 467,400 to 468,335
_02085
PS417_02090: PS417_02090 - glycosyl transferase, at 468,332 to 469,066
_02090
PS417_02095: PS417_02095 - AMP-binding protein, at 469,059 to 470,729
_02095
PS417_02100: PS417_02100 - membrane protein, at 470,726 to 471,271
_02100
PS417_02105: PS417_02105 - acyl carrier protein, at 471,268 to 471,522
_02105
PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801
_02110
Position (kb) 469
470
471 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 468.556 kb on - strand, within PS417_02090 at 468.678 kb on + strand, within PS417_02090 at 468.679 kb on - strand at 469.130 kb on - strand at 469.130 kb on - strand at 469.209 kb on + strand at 469.262 kb on + strand, within PS417_02095 at 469.328 kb on - strand, within PS417_02095 at 469.825 kb on + strand, within PS417_02095 at 469.826 kb on - strand, within PS417_02095 at 470.171 kb on + strand, within PS417_02095 at 470.172 kb on - strand, within PS417_02095 at 470.172 kb on - strand, within PS417_02095 at 470.219 kb on + strand, within PS417_02095 at 470.219 kb on + strand, within PS417_02095 at 470.220 kb on - strand, within PS417_02095 at 470.575 kb on + strand at 470.811 kb on + strand, within PS417_02100 at 470.811 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.914 kb on - strand, within PS417_02100 at 470.983 kb on - strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.294 kb on - strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours remove 468,556 - PS417_02090 0.30 +1.5 468,678 + PS417_02090 0.47 +2.2 468,679 - +1.5 469,130 - +0.9 469,130 - -0.4 469,209 + +0.1 469,262 + PS417_02095 0.12 +4.0 469,328 - PS417_02095 0.16 +4.5 469,825 + PS417_02095 0.46 -0.4 469,826 - PS417_02095 0.46 +0.4 470,171 + PS417_02095 0.67 +0.4 470,172 - PS417_02095 0.67 +0.5 470,172 - PS417_02095 0.67 +0.5 470,219 + PS417_02095 0.69 +1.6 470,219 + PS417_02095 0.69 +0.0 470,220 - PS417_02095 0.69 +0.8 470,575 + +0.1 470,811 + PS417_02100 0.16 +2.4 470,811 + PS417_02100 0.16 +0.8 470,913 + PS417_02100 0.34 +0.4 470,913 + PS417_02100 0.34 -0.3 470,914 - PS417_02100 0.34 +0.9 470,983 - PS417_02100 0.47 -0.5 471,210 + PS417_02100 0.89 +1.0 471,210 + PS417_02100 0.89 +0.6 471,211 - PS417_02100 0.89 +1.0 471,211 - PS417_02100 0.89 +0.4 471,294 - PS417_02105 0.10 +0.9 471,375 + PS417_02105 0.42 +0.6 471,375 + PS417_02105 0.42 +0.3 471,504 + +0.7
Or see this region's nucleotide sequence