Experiment: Growth on radish seeds for 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14140 and PS417_14145 are separated by 146 nucleotides PS417_14145 and PS417_14150 are separated by 170 nucleotides PS417_14150 and PS417_14155 overlap by 4 nucleotides PS417_14155 and PS417_14160 are separated by 71 nucleotides PS417_14160 and PS417_14165 are separated by 176 nucleotides PS417_14165 and PS417_14170 are separated by 19 nucleotides
PS417_14140: PS417_14140 - membrane protein, at 3,102,189 to 3,102,893
_14140
PS417_14145: PS417_14145 - hypothetical protein, at 3,103,040 to 3,103,393
_14145
PS417_14150: PS417_14150 - branched-chain amino acid ABC transporter, at 3,103,564 to 3,103,875
_14150
PS417_14155: PS417_14155 - branched-chain amino acid ABC transporter permease, at 3,103,872 to 3,104,567
_14155
PS417_14160: PS417_14160 - hypothetical protein, at 3,104,639 to 3,104,854
_14160
PS417_14165: PS417_14165 - ArsR family transcriptional regulator, at 3,105,031 to 3,105,387
_14165
PS417_14170: PS417_14170 - arsenical pump membrane protein, at 3,105,407 to 3,106,690
_14170
Position (kb)
3103
3104
3105 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3102.879 kb on + strand at 3102.880 kb on - strand at 3102.923 kb on - strand at 3103.029 kb on - strand at 3103.085 kb on - strand, within PS417_14145 at 3103.085 kb on - strand, within PS417_14145 at 3103.101 kb on + strand, within PS417_14145 at 3103.101 kb on + strand, within PS417_14145 at 3103.102 kb on - strand, within PS417_14145 at 3103.102 kb on - strand, within PS417_14145 at 3103.102 kb on - strand, within PS417_14145 at 3103.104 kb on + strand, within PS417_14145 at 3103.104 kb on + strand at 3103.104 kb on + strand, within PS417_14145 at 3103.105 kb on - strand, within PS417_14145 at 3103.379 kb on + strand at 3103.379 kb on + strand at 3103.379 kb on + strand at 3103.379 kb on + strand at 3103.380 kb on - strand at 3103.424 kb on + strand at 3103.425 kb on - strand at 3103.425 kb on - strand at 3103.493 kb on + strand at 3103.493 kb on + strand at 3103.494 kb on - strand at 3103.494 kb on - strand at 3103.515 kb on - strand at 3103.517 kb on + strand at 3103.673 kb on + strand, within PS417_14150 at 3103.869 kb on - strand at 3103.869 kb on - strand at 3103.869 kb on - strand at 3103.869 kb on - strand at 3103.869 kb on - strand at 3104.017 kb on - strand, within PS417_14155 at 3104.017 kb on - strand at 3104.017 kb on - strand, within PS417_14155 at 3104.149 kb on + strand, within PS417_14155 at 3104.149 kb on + strand, within PS417_14155 at 3104.149 kb on + strand, within PS417_14155 at 3104.150 kb on - strand, within PS417_14155 at 3104.176 kb on + strand, within PS417_14155 at 3104.203 kb on + strand, within PS417_14155 at 3104.203 kb on + strand, within PS417_14155 at 3104.546 kb on - strand at 3104.553 kb on + strand at 3104.554 kb on - strand at 3104.694 kb on + strand, within PS417_14160 at 3104.694 kb on + strand, within PS417_14160 at 3104.694 kb on + strand, within PS417_14160 at 3104.695 kb on - strand, within PS417_14160 at 3104.863 kb on - strand at 3104.892 kb on - strand at 3105.209 kb on + strand, within PS417_14165 at 3105.241 kb on + strand, within PS417_14165 at 3105.241 kb on + strand, within PS417_14165 at 3105.241 kb on + strand, within PS417_14165 at 3105.244 kb on + strand, within PS417_14165 at 3105.245 kb on - strand, within PS417_14165
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 24 hours remove 3,102,879 + +0.4 3,102,880 - -0.9 3,102,923 - -0.6 3,103,029 - +0.4 3,103,085 - PS417_14145 0.13 +0.8 3,103,085 - PS417_14145 0.13 -0.1 3,103,101 + PS417_14145 0.17 +0.7 3,103,101 + PS417_14145 0.17 +2.7 3,103,102 - PS417_14145 0.18 +0.4 3,103,102 - PS417_14145 0.18 -0.5 3,103,102 - PS417_14145 0.18 +0.8 3,103,104 + PS417_14145 0.18 +1.6 3,103,104 + +0.4 3,103,104 + PS417_14145 0.18 +0.7 3,103,105 - PS417_14145 0.18 +0.4 3,103,379 + -0.2 3,103,379 + +2.4 3,103,379 + -0.2 3,103,379 + +0.4 3,103,380 - +0.0 3,103,424 + +0.4 3,103,425 - -0.6 3,103,425 - +1.0 3,103,493 + -0.6 3,103,493 + -1.2 3,103,494 - +0.3 3,103,494 - -1.2 3,103,515 - -0.9 3,103,517 + +0.7 3,103,673 + PS417_14150 0.35 +0.4 3,103,869 - -1.2 3,103,869 - +0.6 3,103,869 - -0.6 3,103,869 - +0.2 3,103,869 - +0.6 3,104,017 - PS417_14155 0.21 +0.4 3,104,017 - +1.4 3,104,017 - PS417_14155 0.21 -0.6 3,104,149 + PS417_14155 0.40 -0.6 3,104,149 + PS417_14155 0.40 -1.6 3,104,149 + PS417_14155 0.40 -0.6 3,104,150 - PS417_14155 0.40 -0.6 3,104,176 + PS417_14155 0.44 -1.6 3,104,203 + PS417_14155 0.48 -1.2 3,104,203 + PS417_14155 0.48 -2.6 3,104,546 - +1.4 3,104,553 + +0.3 3,104,554 - +0.1 3,104,694 + PS417_14160 0.25 +0.5 3,104,694 + PS417_14160 0.25 -0.3 3,104,694 + PS417_14160 0.25 -0.5 3,104,695 - PS417_14160 0.26 +0.4 3,104,863 - -1.6 3,104,892 - +0.3 3,105,209 + PS417_14165 0.50 +0.9 3,105,241 + PS417_14165 0.59 -0.6 3,105,241 + PS417_14165 0.59 +2.0 3,105,241 + PS417_14165 0.59 +0.4 3,105,244 + PS417_14165 0.60 -1.6 3,105,245 - PS417_14165 0.60 +0.1
Or see this region's nucleotide sequence