Strain Fitness in Escherichia coli BW25113 around b1555

Experiment: LB Anaerobic with Mecillinam 0.0000078125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydfP and rzoQ overlap by 448 nucleotidesrzoQ and ydfQ are separated by 189 nucleotidesydfQ and ydfR overlap by 4 nucleotidesydfR and b1556 are separated by 4 nucleotidesb1556 and cspB are separated by 753 nucleotides b1553: ydfP - Qin prophage; conserved protein (NCBI), at 1,637,054 to 1,637,551 ydfP b4689: rzoQ - hypothetical protein (RefSeq), at 1,637,104 to 1,637,358 rzoQ b1554: ydfQ - Qin prophage; predicted lysozyme (NCBI), at 1,637,548 to 1,638,081 ydfQ b1555: ydfR - Qin prophage; predicted protein (NCBI), at 1,638,078 to 1,638,389 ydfR b1556: b1556 - orf, hypothetical protein (VIMSS), at 1,638,394 to 1,638,609 b1556 b1557: cspB - Qin prophage; cold shock protein (NCBI), at 1,639,363 to 1,639,578 cspB Position (kb) 1638 1639Strain fitness (log2 ratio) -1 0 1 2at 1637.122 kb on - strandat 1637.122 kb on - strandat 1637.377 kb on + strand, within ydfPat 1637.377 kb on + strand, within ydfPat 1637.385 kb on - strand, within ydfPat 1637.421 kb on - strand, within ydfPat 1637.577 kb on - strandat 1638.002 kb on + strand, within ydfQat 1638.079 kb on + strandat 1638.405 kb on - strandat 1638.405 kb on - strandat 1638.487 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.495 kb on + strand, within b1556at 1638.498 kb on - strand, within b1556at 1638.513 kb on + strand, within b1556at 1638.624 kb on + strandat 1638.624 kb on + strandat 1638.644 kb on - strandat 1638.653 kb on + strandat 1638.653 kb on + strandat 1638.658 kb on + strandat 1638.667 kb on + strandat 1638.667 kb on + strandat 1638.795 kb on + strandat 1638.800 kb on + strandat 1638.940 kb on + strandat 1638.988 kb on + strandat 1638.988 kb on + strandat 1638.988 kb on + strandat 1639.143 kb on - strandat 1639.143 kb on - strandat 1639.246 kb on - strandat 1639.298 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Mecillinam 0.0000078125 mM
remove
1,637,122 - -0.5
1,637,122 - -0.5
1,637,377 + ydfP b1553 0.65 -0.7
1,637,377 + ydfP b1553 0.65 -1.0
1,637,385 - ydfP b1553 0.66 +0.5
1,637,421 - ydfP b1553 0.74 +0.5
1,637,577 - +1.1
1,638,002 + ydfQ b1554 0.85 -1.0
1,638,079 + -1.0
1,638,405 - -1.0
1,638,405 - -0.5
1,638,487 - b1556 b1556 0.43 -1.0
1,638,489 - b1556 b1556 0.44 -0.5
1,638,489 - b1556 b1556 0.44 -0.2
1,638,489 - b1556 b1556 0.44 -0.8
1,638,495 + b1556 b1556 0.47 -0.5
1,638,498 - b1556 b1556 0.48 +1.1
1,638,513 + b1556 b1556 0.55 -1.0
1,638,624 + -0.5
1,638,624 + -0.5
1,638,644 - +0.5
1,638,653 + +0.2
1,638,653 + -0.5
1,638,658 + +0.5
1,638,667 + +2.1
1,638,667 + +0.5
1,638,795 + +0.5
1,638,800 + +0.5
1,638,940 + +0.5
1,638,988 + +0.5
1,638,988 + +1.5
1,638,988 + +0.5
1,639,143 - -0.3
1,639,143 - -1.3
1,639,246 - +0.5
1,639,298 - -0.2

Or see this region's nucleotide sequence