Experiment: LB Anaerobic with Mecillinam 0.00003125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rtn and yejA are separated by 81 nucleotides yejA and yejB are separated by 0 nucleotides
b2176: rtn - hypothetical protein (NCBI), at 2,268,748 to 2,270,304
rtn
b2177: yejA - orf, hypothetical protein (VIMSS), at 2,270,386 to 2,272,200
yejA
b2178: yejB - predicted oligopeptide transporter subunit (NCBI), at 2,272,201 to 2,273,295
yejB
Position (kb)
2270
2271
2272
2273 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2269.415 kb on - strand, within rtn at 2269.425 kb on - strand, within rtn at 2269.447 kb on - strand, within rtn at 2269.447 kb on - strand, within rtn at 2269.511 kb on - strand, within rtn at 2269.511 kb on - strand, within rtn at 2269.516 kb on - strand, within rtn at 2269.630 kb on - strand, within rtn at 2269.727 kb on + strand, within rtn at 2269.739 kb on + strand, within rtn at 2269.753 kb on - strand, within rtn at 2269.998 kb on + strand, within rtn at 2270.030 kb on - strand, within rtn at 2270.185 kb on - strand at 2270.329 kb on - strand at 2270.363 kb on + strand at 2270.421 kb on + strand at 2270.421 kb on + strand at 2270.429 kb on - strand at 2270.439 kb on + strand at 2270.440 kb on + strand at 2270.440 kb on + strand at 2270.591 kb on + strand, within yejA at 2270.639 kb on - strand, within yejA at 2270.639 kb on - strand, within yejA at 2270.845 kb on + strand, within yejA at 2270.852 kb on - strand, within yejA at 2271.011 kb on + strand, within yejA at 2271.016 kb on + strand, within yejA at 2271.058 kb on + strand, within yejA at 2271.058 kb on + strand, within yejA at 2271.085 kb on + strand, within yejA at 2271.085 kb on + strand, within yejA at 2271.210 kb on - strand, within yejA at 2271.210 kb on - strand, within yejA at 2271.239 kb on - strand, within yejA at 2271.239 kb on - strand, within yejA at 2271.239 kb on - strand, within yejA at 2271.239 kb on - strand, within yejA at 2271.240 kb on - strand, within yejA at 2271.295 kb on + strand, within yejA at 2271.300 kb on + strand, within yejA at 2271.308 kb on - strand, within yejA at 2271.308 kb on - strand, within yejA at 2271.363 kb on + strand, within yejA at 2271.561 kb on + strand, within yejA at 2271.574 kb on + strand, within yejA at 2271.639 kb on - strand, within yejA at 2271.639 kb on - strand, within yejA at 2271.639 kb on - strand, within yejA at 2271.639 kb on - strand, within yejA at 2271.639 kb on - strand, within yejA at 2271.641 kb on - strand, within yejA at 2271.657 kb on + strand, within yejA at 2271.707 kb on + strand, within yejA at 2271.729 kb on - strand, within yejA at 2271.730 kb on + strand, within yejA at 2271.730 kb on + strand, within yejA at 2271.826 kb on - strand, within yejA at 2271.871 kb on - strand, within yejA at 2271.925 kb on + strand, within yejA at 2272.009 kb on + strand, within yejA at 2272.117 kb on + strand at 2272.126 kb on - strand at 2272.126 kb on - strand at 2272.152 kb on + strand at 2272.152 kb on + strand at 2272.255 kb on - strand at 2272.348 kb on + strand, within yejB at 2272.348 kb on + strand, within yejB at 2272.385 kb on - strand, within yejB at 2272.583 kb on - strand, within yejB at 2272.597 kb on + strand, within yejB at 2272.599 kb on + strand, within yejB at 2272.637 kb on + strand, within yejB at 2272.686 kb on - strand, within yejB at 2272.686 kb on - strand, within yejB at 2272.970 kb on + strand, within yejB at 2273.143 kb on + strand, within yejB at 2273.198 kb on - strand at 2273.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Mecillinam 0.00003125 mM remove 2,269,415 - rtn b2176 0.43 -1.5 2,269,425 - rtn b2176 0.43 +0.2 2,269,447 - rtn b2176 0.45 -1.2 2,269,447 - rtn b2176 0.45 -0.4 2,269,511 - rtn b2176 0.49 -0.2 2,269,511 - rtn b2176 0.49 -0.4 2,269,516 - rtn b2176 0.49 -0.2 2,269,630 - rtn b2176 0.57 +0.3 2,269,727 + rtn b2176 0.63 -0.4 2,269,739 + rtn b2176 0.64 -2.9 2,269,753 - rtn b2176 0.65 -0.7 2,269,998 + rtn b2176 0.80 -0.5 2,270,030 - rtn b2176 0.82 -0.7 2,270,185 - -0.6 2,270,329 - +0.3 2,270,363 + +0.6 2,270,421 + -1.5 2,270,421 + +0.3 2,270,429 - +0.6 2,270,439 + -0.5 2,270,440 + +0.6 2,270,440 + -1.2 2,270,591 + yejA b2177 0.11 -0.7 2,270,639 - yejA b2177 0.14 +0.2 2,270,639 - yejA b2177 0.14 +1.2 2,270,845 + yejA b2177 0.25 +0.4 2,270,852 - yejA b2177 0.26 +0.3 2,271,011 + yejA b2177 0.34 -1.2 2,271,016 + yejA b2177 0.35 -1.1 2,271,058 + yejA b2177 0.37 +0.9 2,271,058 + yejA b2177 0.37 +0.2 2,271,085 + yejA b2177 0.39 -0.7 2,271,085 + yejA b2177 0.39 +0.1 2,271,210 - yejA b2177 0.45 +0.1 2,271,210 - yejA b2177 0.45 -1.2 2,271,239 - yejA b2177 0.47 -1.8 2,271,239 - yejA b2177 0.47 +1.6 2,271,239 - yejA b2177 0.47 -1.9 2,271,239 - yejA b2177 0.47 -0.6 2,271,240 - yejA b2177 0.47 +1.9 2,271,295 + yejA b2177 0.50 +0.6 2,271,300 + yejA b2177 0.50 +0.3 2,271,308 - yejA b2177 0.51 +0.9 2,271,308 - yejA b2177 0.51 +0.6 2,271,363 + yejA b2177 0.54 -0.1 2,271,561 + yejA b2177 0.65 +0.5 2,271,574 + yejA b2177 0.65 -0.8 2,271,639 - yejA b2177 0.69 +0.1 2,271,639 - yejA b2177 0.69 +1.0 2,271,639 - yejA b2177 0.69 -0.9 2,271,639 - yejA b2177 0.69 +1.1 2,271,639 - yejA b2177 0.69 +0.9 2,271,641 - yejA b2177 0.69 -0.2 2,271,657 + yejA b2177 0.70 +1.6 2,271,707 + yejA b2177 0.73 -0.4 2,271,729 - yejA b2177 0.74 +0.6 2,271,730 + yejA b2177 0.74 -1.1 2,271,730 + yejA b2177 0.74 -1.8 2,271,826 - yejA b2177 0.79 -0.8 2,271,871 - yejA b2177 0.82 -0.2 2,271,925 + yejA b2177 0.85 -0.5 2,272,009 + yejA b2177 0.89 +0.0 2,272,117 + +0.4 2,272,126 - +0.0 2,272,126 - -0.1 2,272,152 + +0.1 2,272,152 + -1.0 2,272,255 - +0.8 2,272,348 + yejB b2178 0.13 -0.9 2,272,348 + yejB b2178 0.13 +0.8 2,272,385 - yejB b2178 0.17 -0.5 2,272,583 - yejB b2178 0.35 +1.3 2,272,597 + yejB b2178 0.36 +0.2 2,272,599 + yejB b2178 0.36 -0.0 2,272,637 + yejB b2178 0.40 +0.3 2,272,686 - yejB b2178 0.44 +0.3 2,272,686 - yejB b2178 0.44 +0.1 2,272,970 + yejB b2178 0.70 +0.4 2,273,143 + yejB b2178 0.86 -0.6 2,273,198 - -0.4 2,273,198 - -0.9
Or see this region's nucleotide sequence