Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3076

Experiment: KB with Anabasine Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3075 and Psyr_3076 overlap by 8 nucleotidesPsyr_3076 and Psyr_3077 are separated by 142 nucleotides Psyr_3075: Psyr_3075 - Type I secretion membrane fusion protein, HlyD, at 3,676,622 to 3,678,043 _3075 Psyr_3076: Psyr_3076 - Type I secretion system ATPase, HlyB, at 3,678,036 to 3,680,198 _3076 Psyr_3077: Psyr_3077 - Type I secretion outer membrane protein, TolC, at 3,680,341 to 3,681,816 _3077 Position (kb) 3678 3679 3680 3681Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3677.298 kb on + strand, within Psyr_3075at 3677.316 kb on + strand, within Psyr_3075at 3677.316 kb on + strand, within Psyr_3075at 3677.316 kb on + strand, within Psyr_3075at 3677.317 kb on - strand, within Psyr_3075at 3677.317 kb on - strand, within Psyr_3075at 3677.317 kb on - strand, within Psyr_3075at 3677.317 kb on - strand, within Psyr_3075at 3677.398 kb on + strand, within Psyr_3075at 3677.459 kb on - strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.507 kb on + strand, within Psyr_3075at 3677.508 kb on - strand, within Psyr_3075at 3677.508 kb on - strand, within Psyr_3075at 3677.508 kb on - strand, within Psyr_3075at 3677.508 kb on - strand, within Psyr_3075at 3677.508 kb on - strand, within Psyr_3075at 3678.037 kb on + strandat 3678.080 kb on - strandat 3678.126 kb on + strandat 3678.126 kb on + strandat 3678.127 kb on - strandat 3678.332 kb on + strand, within Psyr_3076at 3678.332 kb on + strand, within Psyr_3076at 3678.515 kb on + strand, within Psyr_3076at 3678.515 kb on + strand, within Psyr_3076at 3678.529 kb on - strand, within Psyr_3076at 3678.588 kb on + strand, within Psyr_3076at 3678.588 kb on + strand, within Psyr_3076at 3678.588 kb on + strand, within Psyr_3076at 3678.612 kb on + strand, within Psyr_3076at 3678.616 kb on + strand, within Psyr_3076at 3678.616 kb on + strand, within Psyr_3076at 3678.616 kb on + strand, within Psyr_3076at 3678.616 kb on + strand, within Psyr_3076at 3678.616 kb on + strand, within Psyr_3076at 3678.617 kb on - strand, within Psyr_3076at 3678.617 kb on - strand, within Psyr_3076at 3678.617 kb on - strand, within Psyr_3076at 3678.627 kb on + strand, within Psyr_3076at 3678.628 kb on - strand, within Psyr_3076at 3678.827 kb on + strand, within Psyr_3076at 3679.087 kb on + strand, within Psyr_3076at 3679.088 kb on - strand, within Psyr_3076at 3679.088 kb on - strand, within Psyr_3076at 3679.145 kb on + strand, within Psyr_3076at 3679.146 kb on - strand, within Psyr_3076at 3679.146 kb on - strand, within Psyr_3076at 3679.265 kb on - strand, within Psyr_3076at 3679.313 kb on - strand, within Psyr_3076at 3679.450 kb on + strand, within Psyr_3076at 3679.500 kb on + strand, within Psyr_3076at 3679.500 kb on + strand, within Psyr_3076at 3679.500 kb on + strand, within Psyr_3076at 3679.500 kb on + strand, within Psyr_3076at 3679.501 kb on - strand, within Psyr_3076at 3679.501 kb on - strand, within Psyr_3076at 3679.501 kb on - strand, within Psyr_3076at 3679.534 kb on + strand, within Psyr_3076at 3679.534 kb on + strand, within Psyr_3076at 3679.534 kb on + strand, within Psyr_3076at 3679.534 kb on + strand, within Psyr_3076at 3679.629 kb on + strand, within Psyr_3076at 3679.629 kb on + strand, within Psyr_3076at 3679.629 kb on + strand, within Psyr_3076at 3679.630 kb on - strand, within Psyr_3076at 3679.630 kb on - strand, within Psyr_3076at 3679.630 kb on - strand, within Psyr_3076at 3679.630 kb on - strand, within Psyr_3076at 3679.809 kb on + strand, within Psyr_3076at 3679.810 kb on - strand, within Psyr_3076at 3679.847 kb on + strand, within Psyr_3076at 3679.847 kb on + strand, within Psyr_3076at 3679.848 kb on - strand, within Psyr_3076at 3680.050 kb on + strandat 3680.051 kb on - strandat 3680.051 kb on - strandat 3680.051 kb on - strandat 3680.246 kb on - strandat 3680.252 kb on + strandat 3680.252 kb on + strandat 3680.252 kb on + strandat 3680.259 kb on - strandat 3680.259 kb on - strandat 3680.324 kb on + strandat 3680.393 kb on + strandat 3680.393 kb on + strandat 3680.394 kb on - strandat 3680.394 kb on - strandat 3680.394 kb on - strandat 3680.396 kb on - strandat 3680.396 kb on - strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.468 kb on + strandat 3680.469 kb on - strandat 3680.469 kb on - strandat 3680.488 kb on - strandat 3680.488 kb on - strandat 3680.508 kb on - strand, within Psyr_3077at 3680.530 kb on + strand, within Psyr_3077at 3680.530 kb on + strand, within Psyr_3077at 3680.530 kb on + strand, within Psyr_3077at 3680.531 kb on - strand, within Psyr_3077at 3680.633 kb on - strand, within Psyr_3077at 3680.667 kb on + strand, within Psyr_3077at 3680.668 kb on - strand, within Psyr_3077at 3680.769 kb on - strand, within Psyr_3077at 3680.934 kb on + strand, within Psyr_3077at 3681.061 kb on + strand, within Psyr_3077at 3681.061 kb on + strand, within Psyr_3077at 3681.061 kb on + strand, within Psyr_3077at 3681.061 kb on + strand, within Psyr_3077at 3681.061 kb on + strand, within Psyr_3077at 3681.062 kb on - strand, within Psyr_3077at 3681.080 kb on + strand, within Psyr_3077at 3681.080 kb on + strand, within Psyr_3077at 3681.080 kb on + strand, within Psyr_3077at 3681.080 kb on + strand, within Psyr_3077at 3681.081 kb on - strand, within Psyr_3077at 3681.081 kb on - strand, within Psyr_3077at 3681.114 kb on - strand, within Psyr_3077at 3681.114 kb on - strand, within Psyr_3077at 3681.124 kb on + strand, within Psyr_3077at 3681.167 kb on + strand, within Psyr_3077at 3681.168 kb on - strand, within Psyr_3077at 3681.185 kb on + strand, within Psyr_3077at 3681.185 kb on + strand, within Psyr_3077at 3681.185 kb on + strand, within Psyr_3077

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anabasine Hydrochloride 10 mM
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3,677,298 + Psyr_3075 0.48 +0.5
3,677,316 + Psyr_3075 0.49 +0.7
3,677,316 + Psyr_3075 0.49 +0.1
3,677,316 + Psyr_3075 0.49 +0.1
3,677,317 - Psyr_3075 0.49 -3.2
3,677,317 - Psyr_3075 0.49 -1.3
3,677,317 - Psyr_3075 0.49 +0.0
3,677,317 - Psyr_3075 0.49 -0.0
3,677,398 + Psyr_3075 0.55 +0.7
3,677,459 - Psyr_3075 0.59 -1.4
3,677,507 + Psyr_3075 0.62 -0.9
3,677,507 + Psyr_3075 0.62 -1.2
3,677,507 + Psyr_3075 0.62 +0.5
3,677,507 + Psyr_3075 0.62 -0.5
3,677,507 + Psyr_3075 0.62 +0.3
3,677,507 + Psyr_3075 0.62 -0.4
3,677,508 - Psyr_3075 0.62 -0.9
3,677,508 - Psyr_3075 0.62 +0.5
3,677,508 - Psyr_3075 0.62 +0.3
3,677,508 - Psyr_3075 0.62 +1.0
3,677,508 - Psyr_3075 0.62 +1.2
3,678,037 + -0.3
3,678,080 - +0.0
3,678,126 + -0.4
3,678,126 + -0.6
3,678,127 - +0.6
3,678,332 + Psyr_3076 0.14 +1.8
3,678,332 + Psyr_3076 0.14 +0.7
3,678,515 + Psyr_3076 0.22 +0.2
3,678,515 + Psyr_3076 0.22 -0.1
3,678,529 - Psyr_3076 0.23 +0.0
3,678,588 + Psyr_3076 0.26 -1.8
3,678,588 + Psyr_3076 0.26 +1.0
3,678,588 + Psyr_3076 0.26 +0.4
3,678,612 + Psyr_3076 0.27 -0.7
3,678,616 + Psyr_3076 0.27 -1.0
3,678,616 + Psyr_3076 0.27 -0.1
3,678,616 + Psyr_3076 0.27 -0.1
3,678,616 + Psyr_3076 0.27 +0.5
3,678,616 + Psyr_3076 0.27 +0.8
3,678,617 - Psyr_3076 0.27 +0.8
3,678,617 - Psyr_3076 0.27 -0.3
3,678,617 - Psyr_3076 0.27 +0.2
3,678,627 + Psyr_3076 0.27 +0.2
3,678,628 - Psyr_3076 0.27 -0.5
3,678,827 + Psyr_3076 0.37 +0.8
3,679,087 + Psyr_3076 0.49 -0.2
3,679,088 - Psyr_3076 0.49 -1.1
3,679,088 - Psyr_3076 0.49 +0.8
3,679,145 + Psyr_3076 0.51 +0.0
3,679,146 - Psyr_3076 0.51 -0.5
3,679,146 - Psyr_3076 0.51 +0.4
3,679,265 - Psyr_3076 0.57 +0.6
3,679,313 - Psyr_3076 0.59 +2.0
3,679,450 + Psyr_3076 0.65 +0.2
3,679,500 + Psyr_3076 0.68 +0.7
3,679,500 + Psyr_3076 0.68 +0.3
3,679,500 + Psyr_3076 0.68 +1.2
3,679,500 + Psyr_3076 0.68 -1.3
3,679,501 - Psyr_3076 0.68 -0.2
3,679,501 - Psyr_3076 0.68 -0.0
3,679,501 - Psyr_3076 0.68 -0.5
3,679,534 + Psyr_3076 0.69 +0.2
3,679,534 + Psyr_3076 0.69 -0.5
3,679,534 + Psyr_3076 0.69 +0.2
3,679,534 + Psyr_3076 0.69 +0.5
3,679,629 + Psyr_3076 0.74 +3.1
3,679,629 + Psyr_3076 0.74 -1.4
3,679,629 + Psyr_3076 0.74 -0.8
3,679,630 - Psyr_3076 0.74 +0.8
3,679,630 - Psyr_3076 0.74 -0.6
3,679,630 - Psyr_3076 0.74 -0.4
3,679,630 - Psyr_3076 0.74 -0.7
3,679,809 + Psyr_3076 0.82 -0.4
3,679,810 - Psyr_3076 0.82 +0.0
3,679,847 + Psyr_3076 0.84 -1.2
3,679,847 + Psyr_3076 0.84 -0.0
3,679,848 - Psyr_3076 0.84 +0.2
3,680,050 + -0.5
3,680,051 - -0.7
3,680,051 - +1.0
3,680,051 - +0.2
3,680,246 - +0.1
3,680,252 + +0.1
3,680,252 + +0.4
3,680,252 + -0.3
3,680,259 - -0.3
3,680,259 - +0.6
3,680,324 + -0.5
3,680,393 + -0.6
3,680,393 + -0.6
3,680,394 - -0.8
3,680,394 - -0.2
3,680,394 - +0.1
3,680,396 - -0.7
3,680,396 - +0.5
3,680,468 + +0.3
3,680,468 + -0.0
3,680,468 + -1.2
3,680,468 + -0.2
3,680,468 + -0.7
3,680,468 + -1.2
3,680,468 + -0.5
3,680,469 - -0.6
3,680,469 - -0.8
3,680,488 - -0.6
3,680,488 - -0.4
3,680,508 - Psyr_3077 0.11 -0.6
3,680,530 + Psyr_3077 0.13 -1.8
3,680,530 + Psyr_3077 0.13 +0.4
3,680,530 + Psyr_3077 0.13 -1.3
3,680,531 - Psyr_3077 0.13 +0.4
3,680,633 - Psyr_3077 0.20 -2.0
3,680,667 + Psyr_3077 0.22 +0.1
3,680,668 - Psyr_3077 0.22 -1.2
3,680,769 - Psyr_3077 0.29 -0.6
3,680,934 + Psyr_3077 0.40 -1.2
3,681,061 + Psyr_3077 0.49 -1.0
3,681,061 + Psyr_3077 0.49 +0.5
3,681,061 + Psyr_3077 0.49 -1.0
3,681,061 + Psyr_3077 0.49 +1.0
3,681,061 + Psyr_3077 0.49 +0.3
3,681,062 - Psyr_3077 0.49 +0.1
3,681,080 + Psyr_3077 0.50 -0.5
3,681,080 + Psyr_3077 0.50 -0.9
3,681,080 + Psyr_3077 0.50 -0.7
3,681,080 + Psyr_3077 0.50 +0.6
3,681,081 - Psyr_3077 0.50 +1.7
3,681,081 - Psyr_3077 0.50 -1.0
3,681,114 - Psyr_3077 0.52 -0.1
3,681,114 - Psyr_3077 0.52 +2.6
3,681,124 + Psyr_3077 0.53 -0.3
3,681,167 + Psyr_3077 0.56 +0.3
3,681,168 - Psyr_3077 0.56 +0.8
3,681,185 + Psyr_3077 0.57 -0.3
3,681,185 + Psyr_3077 0.57 -0.1
3,681,185 + Psyr_3077 0.57 +0.6

Or see this region's nucleotide sequence