Strain Fitness in Escherichia coli BW25113 around b2834

Experiment: LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.000000625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.000000625 mM
2,968,620	-	ygdQ	b2832	0.25	-1.3
2,968,620	-	ygdQ	b2832	0.25	+1.5
2,968,648	+	ygdQ	b2832	0.29	+0.3
2,968,648	+	ygdQ	b2832	0.29	-0.8
2,968,674	+	ygdQ	b2832	0.32	-1.0
2,968,786	-	ygdQ	b2832	0.48	-0.3
2,968,829	+	ygdQ	b2832	0.54	-0.1
2,968,856	-	ygdQ	b2832	0.58	-0.6
2,968,880	+	ygdQ	b2832	0.61	-0.4
2,968,942	+	ygdQ	b2832	0.70	-0.5
2,968,942	+	ygdQ	b2832	0.70	+0.5
2,968,955	-	ygdQ	b2832	0.72	-0.7
2,969,039	-	ygdQ	b2832	0.84	-1.3
2,969,039	-	ygdQ	b2832	0.84	-0.1
2,969,108	-				-0.1
2,969,108	-				+0.5
2,969,160	-				-0.1
2,969,160	-				+0.1
2,969,164	+				+0.7
2,969,172	-				+0.2
2,969,172	-				+0.5
2,969,193	+				-0.2
2,969,193	-				+0.1
2,969,202	-				-0.9
2,969,231	+				-0.8
2,969,242	-				-0.6
2,969,263	+				+0.3
2,969,263	+				+0.5
2,969,280	-				-1.9
2,969,281	-				-2.2
2,969,286	-				-0.5
2,969,327	+	ygdR	b2833	0.16	+0.2
2,969,426	+	ygdR	b2833	0.61	-0.5
2,969,439	+	ygdR	b2833	0.67	-0.7
2,969,439	+	ygdR	b2833	0.67	-0.8
2,969,454	+	ygdR	b2833	0.74	-0.6
2,969,457	+	ygdR	b2833	0.75	+0.9
2,969,457	+	ygdR	b2833	0.75	+0.9
2,969,457	+	ygdR	b2833	0.75	-0.1
2,969,458	-	ygdR	b2833	0.75	+0.5
2,969,467	-	ygdR	b2833	0.79	-0.4
2,969,616	+				-0.9
2,969,636	+				-0.4
2,969,642	-				-0.8
2,969,654	+				-0.2
2,969,693	+				+0.1
2,969,699	-				+0.4
2,969,746	+	tas	b2834	0.12	+0.3
2,969,746	+	tas	b2834	0.12	-0.4
2,969,753	-	tas	b2834	0.13	-0.4
2,969,755	-	tas	b2834	0.13	-0.9
2,969,872	+	tas	b2834	0.24	-0.1
2,969,872	+	tas	b2834	0.24	-0.1
2,969,912	-	tas	b2834	0.28	+0.0
2,969,917	+	tas	b2834	0.29	-0.4
2,969,976	-	tas	b2834	0.34	-0.5
2,969,976	-	tas	b2834	0.34	+0.3
2,969,984	-	tas	b2834	0.35	+0.3
2,969,993	+	tas	b2834	0.36	-0.5
2,970,254	-	tas	b2834	0.61	-0.7
2,970,254	-	tas	b2834	0.61	+0.8
2,970,283	-	tas	b2834	0.64	-0.2
2,970,290	+	tas	b2834	0.64	+0.2
2,970,324	-	tas	b2834	0.68	+0.7
2,970,336	+	tas	b2834	0.69	+0.8
2,970,336	+	tas	b2834	0.69	+0.5
2,970,410	+	tas	b2834	0.76	+0.4
2,970,471	+	tas	b2834	0.82	-1.2
2,970,471	+	tas	b2834	0.82	+0.9
2,970,480	-	tas	b2834	0.83	-0.6
2,970,499	+	tas	b2834	0.85	+1.1
2,970,499	+	tas	b2834	0.85	-2.1
2,970,601	-				+0.7
2,970,635	+				+0.8
2,970,635	+				+1.3
2,970,654	+				+1.0
2,970,654	+				-0.1
2,970,654	+				-1.6
2,970,710	+				-1.6
2,970,781	-				+2.2
2,970,781	-				-0.1
2,970,900	-	ygeD	b2835	0.18	-0.2
2,970,970	-	ygeD	b2835	0.23	-1.5
2,971,028	+	ygeD	b2835	0.28	-0.0
2,971,028	+	ygeD	b2835	0.28	+1.7
2,971,031	-	ygeD	b2835	0.28	-0.5
2,971,031	-	ygeD	b2835	0.28	-0.2
2,971,033	-	ygeD	b2835	0.29	-0.3
2,971,068	-	ygeD	b2835	0.32	-1.1
2,971,154	-	ygeD	b2835	0.39	+0.8
2,971,180	+	ygeD	b2835	0.41	+0.1
2,971,303	-	ygeD	b2835	0.51	-0.1
2,971,305	+	ygeD	b2835	0.51	-0.4
2,971,360	+	ygeD	b2835	0.56	-0.1
2,971,360	+	ygeD	b2835	0.56	-0.7
2,971,438	-	ygeD	b2835	0.63	+0.9
2,971,489	+	ygeD	b2835	0.67	-1.2
2,971,489	+	ygeD	b2835	0.67	-0.1
2,971,489	+	ygeD	b2835	0.67	-0.6
2,971,571	-	ygeD	b2835	0.74	-0.7
2,971,581	+	ygeD	b2835	0.75	-0.1
2,971,617	+	ygeD	b2835	0.78	-0.4
2,971,625	-	ygeD	b2835	0.78	-2.5
2,971,625	-	ygeD	b2835	0.78	-0.7
2,971,634	+	ygeD	b2835	0.79	+0.5
2,971,656	-	ygeD	b2835	0.81	-1.1
2,971,656	-	ygeD	b2835	0.81	-1.5