Experiment: KB with Isosafrole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4986 and Psyr_4987 are separated by 6 nucleotides Psyr_4987 and Psyr_4988 are separated by 162 nucleotides
Psyr_4986: Psyr_4986 - YD repeat protein, at 5,911,246 to 5,915,475
_4986
Psyr_4987: Psyr_4987 - conserved hypothetical protein, at 5,915,482 to 5,916,090
_4987
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Position (kb) 5915
5916
5917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5914.561 kb on + strand, within Psyr_4986 at 5914.561 kb on + strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.691 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.693 kb on - strand, within Psyr_4986 at 5914.697 kb on - strand, within Psyr_4986 at 5914.697 kb on - strand, within Psyr_4986 at 5914.697 kb on - strand, within Psyr_4986 at 5914.697 kb on - strand, within Psyr_4986 at 5914.942 kb on + strand, within Psyr_4986 at 5914.953 kb on + strand, within Psyr_4986 at 5914.983 kb on + strand, within Psyr_4986 at 5915.018 kb on - strand, within Psyr_4986 at 5915.076 kb on + strand at 5915.077 kb on - strand at 5915.090 kb on + strand at 5915.090 kb on + strand at 5915.090 kb on + strand at 5915.090 kb on + strand at 5915.090 kb on + strand at 5915.091 kb on - strand at 5915.138 kb on + strand at 5915.139 kb on - strand at 5915.171 kb on + strand at 5915.171 kb on + strand at 5915.172 kb on - strand at 5915.172 kb on - strand at 5915.172 kb on - strand at 5915.223 kb on + strand at 5915.224 kb on - strand at 5915.224 kb on - strand at 5915.238 kb on - strand at 5915.268 kb on + strand at 5915.268 kb on + strand at 5915.269 kb on - strand at 5915.277 kb on + strand at 5915.309 kb on + strand at 5915.310 kb on - strand at 5915.367 kb on - strand at 5915.451 kb on + strand at 5916.093 kb on - strand at 5916.136 kb on + strand at 5916.136 kb on + strand at 5916.137 kb on - strand at 5916.173 kb on + strand at 5916.200 kb on - strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.267 kb on - strand at 5916.267 kb on - strand at 5916.353 kb on - strand at 5916.435 kb on - strand, within Psyr_4988 at 5916.449 kb on - strand, within Psyr_4988 at 5916.778 kb on + strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5917.037 kb on + strand, within Psyr_4988
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM remove 5,914,561 + Psyr_4986 0.78 +0.6 5,914,561 + Psyr_4986 0.78 +0.5 5,914,691 - Psyr_4986 0.81 +1.5 5,914,691 - Psyr_4986 0.81 -0.5 5,914,691 - Psyr_4986 0.81 +0.6 5,914,691 - Psyr_4986 0.81 +0.8 5,914,691 - Psyr_4986 0.81 +0.7 5,914,691 - Psyr_4986 0.81 +0.2 5,914,691 - Psyr_4986 0.81 -0.1 5,914,691 - Psyr_4986 0.81 -0.1 5,914,691 - Psyr_4986 0.81 -0.1 5,914,691 - Psyr_4986 0.81 +0.2 5,914,691 - Psyr_4986 0.81 -1.2 5,914,691 - Psyr_4986 0.81 +0.7 5,914,691 - Psyr_4986 0.81 +0.3 5,914,693 - Psyr_4986 0.81 -0.5 5,914,693 - Psyr_4986 0.81 +0.7 5,914,693 - Psyr_4986 0.81 +0.5 5,914,693 - Psyr_4986 0.81 +0.2 5,914,693 - Psyr_4986 0.81 -0.2 5,914,693 - Psyr_4986 0.81 -0.6 5,914,697 - Psyr_4986 0.82 -0.3 5,914,697 - Psyr_4986 0.82 +0.4 5,914,697 - Psyr_4986 0.82 +0.3 5,914,697 - Psyr_4986 0.82 -1.1 5,914,942 + Psyr_4986 0.87 +0.0 5,914,953 + Psyr_4986 0.88 -0.9 5,914,983 + Psyr_4986 0.88 +0.5 5,915,018 - Psyr_4986 0.89 -0.8 5,915,076 + -0.9 5,915,077 - +0.5 5,915,090 + +0.5 5,915,090 + -0.2 5,915,090 + +2.5 5,915,090 + -0.5 5,915,090 + +0.3 5,915,091 - +0.1 5,915,138 + +0.5 5,915,139 - +0.0 5,915,171 + -0.1 5,915,171 + -0.9 5,915,172 - -0.2 5,915,172 - +0.8 5,915,172 - -0.5 5,915,223 + +2.2 5,915,224 - +0.9 5,915,224 - -2.3 5,915,238 - +0.5 5,915,268 + +0.9 5,915,268 + -1.0 5,915,269 - -1.7 5,915,277 + +0.1 5,915,309 + +0.1 5,915,310 - +0.8 5,915,367 - -2.8 5,915,451 + +0.7 5,916,093 - -0.9 5,916,136 + -0.4 5,916,136 + -0.5 5,916,137 - -1.0 5,916,173 + -0.8 5,916,200 - -0.3 5,916,250 + +0.4 5,916,250 + +0.5 5,916,250 + -0.2 5,916,250 + -0.1 5,916,250 + -0.1 5,916,250 + +1.5 5,916,250 + -0.3 5,916,251 - +0.5 5,916,251 - +0.1 5,916,251 - -0.1 5,916,251 - -2.2 5,916,251 - +0.0 5,916,251 - +0.9 5,916,267 - +1.3 5,916,267 - +1.6 5,916,353 - +0.7 5,916,435 - Psyr_4988 0.13 -0.5 5,916,449 - Psyr_4988 0.14 +0.2 5,916,778 + Psyr_4988 0.36 -1.3 5,916,858 + Psyr_4988 0.42 -1.1 5,917,037 + Psyr_4988 0.54 -0.3
Or see this region's nucleotide sequence