Experiment: KB with Isosafrole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4206 and Psyr_4207 are separated by 15 nucleotides Psyr_4207 and Psyr_4208 are separated by 391 nucleotides
Psyr_4206: Psyr_4206 - GGDEF domain protein, at 5,008,801 to 5,009,886
_4206
Psyr_4207: Psyr_4207 - GCN5-related N-acetyltransferase, at 5,009,902 to 5,010,333
_4207
Psyr_4208: Psyr_4208 - heme catalase/peroxidase, at 5,010,725 to 5,012,995
_4208
Position (kb) 5009
5010
5011 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5008.906 kb on - strand at 5008.906 kb on - strand at 5008.924 kb on - strand, within Psyr_4206 at 5008.924 kb on - strand, within Psyr_4206 at 5008.924 kb on - strand, within Psyr_4206 at 5008.924 kb on - strand, within Psyr_4206 at 5008.924 kb on - strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.925 kb on + strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5008.926 kb on - strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.020 kb on + strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.021 kb on - strand, within Psyr_4206 at 5009.129 kb on + strand, within Psyr_4206 at 5009.129 kb on + strand, within Psyr_4206 at 5009.130 kb on - strand, within Psyr_4206 at 5009.152 kb on + strand, within Psyr_4206 at 5009.152 kb on + strand, within Psyr_4206 at 5009.152 kb on + strand, within Psyr_4206 at 5009.152 kb on + strand, within Psyr_4206 at 5009.152 kb on + strand, within Psyr_4206 at 5009.153 kb on - strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.225 kb on + strand, within Psyr_4206 at 5009.226 kb on - strand, within Psyr_4206 at 5009.226 kb on - strand, within Psyr_4206 at 5009.226 kb on - strand, within Psyr_4206 at 5009.226 kb on - strand, within Psyr_4206 at 5009.226 kb on - strand, within Psyr_4206 at 5009.236 kb on + strand, within Psyr_4206 at 5009.236 kb on + strand, within Psyr_4206 at 5009.237 kb on - strand, within Psyr_4206 at 5009.237 kb on - strand, within Psyr_4206 at 5009.237 kb on - strand, within Psyr_4206 at 5009.237 kb on - strand, within Psyr_4206 at 5009.237 kb on - strand, within Psyr_4206 at 5009.261 kb on + strand, within Psyr_4206 at 5009.298 kb on + strand, within Psyr_4206 at 5009.298 kb on + strand, within Psyr_4206 at 5009.298 kb on + strand, within Psyr_4206 at 5009.463 kb on + strand, within Psyr_4206 at 5009.463 kb on + strand, within Psyr_4206 at 5009.463 kb on + strand, within Psyr_4206 at 5009.463 kb on + strand, within Psyr_4206 at 5009.463 kb on + strand, within Psyr_4206 at 5009.469 kb on + strand, within Psyr_4206 at 5009.469 kb on + strand, within Psyr_4206 at 5009.511 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.621 kb on + strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.622 kb on - strand, within Psyr_4206 at 5009.639 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.765 kb on - strand, within Psyr_4206 at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.810 kb on + strand at 5009.810 kb on + strand at 5009.810 kb on + strand at 5009.874 kb on + strand at 5009.875 kb on - strand at 5009.884 kb on + strand at 5009.997 kb on + strand, within Psyr_4207 at 5009.997 kb on + strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.030 kb on + strand, within Psyr_4207 at 5010.030 kb on + strand, within Psyr_4207 at 5010.031 kb on - strand, within Psyr_4207 at 5010.126 kb on - strand, within Psyr_4207 at 5010.339 kb on - strand at 5010.374 kb on - strand at 5010.442 kb on + strand at 5010.468 kb on - strand at 5010.476 kb on + strand at 5010.477 kb on - strand at 5010.520 kb on - strand at 5010.520 kb on - strand at 5010.540 kb on + strand at 5010.541 kb on - strand at 5010.597 kb on + strand at 5010.597 kb on + strand at 5010.597 kb on + strand at 5010.598 kb on - strand at 5010.717 kb on + strand at 5010.718 kb on - strand at 5010.718 kb on - strand at 5010.989 kb on - strand, within Psyr_4208 at 5011.010 kb on - strand, within Psyr_4208 at 5011.139 kb on + strand, within Psyr_4208 at 5011.139 kb on + strand, within Psyr_4208 at 5011.139 kb on + strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.269 kb on - strand, within Psyr_4208 at 5011.269 kb on - strand, within Psyr_4208
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM remove 5,008,906 - +0.4 5,008,906 - -0.9 5,008,924 - Psyr_4206 0.11 -0.9 5,008,924 - Psyr_4206 0.11 -0.2 5,008,924 - Psyr_4206 0.11 +0.4 5,008,924 - Psyr_4206 0.11 +0.8 5,008,924 - Psyr_4206 0.11 +1.0 5,008,925 + Psyr_4206 0.11 -0.1 5,008,925 + Psyr_4206 0.11 -0.0 5,008,925 + Psyr_4206 0.11 -1.9 5,008,925 + Psyr_4206 0.11 -0.2 5,008,925 + Psyr_4206 0.11 -0.3 5,008,925 + Psyr_4206 0.11 +0.1 5,008,925 + Psyr_4206 0.11 -0.2 5,008,925 + Psyr_4206 0.11 -0.2 5,008,926 - Psyr_4206 0.12 +0.6 5,008,926 - Psyr_4206 0.12 +0.3 5,008,926 - Psyr_4206 0.12 +1.0 5,008,926 - Psyr_4206 0.12 +0.0 5,008,926 - Psyr_4206 0.12 +0.2 5,008,926 - Psyr_4206 0.12 +0.3 5,008,926 - Psyr_4206 0.12 -1.0 5,008,926 - Psyr_4206 0.12 -0.6 5,008,926 - Psyr_4206 0.12 -0.3 5,008,926 - Psyr_4206 0.12 +1.1 5,008,926 - Psyr_4206 0.12 +0.2 5,008,926 - Psyr_4206 0.12 -0.7 5,008,926 - Psyr_4206 0.12 +0.3 5,008,926 - Psyr_4206 0.12 +1.3 5,008,926 - Psyr_4206 0.12 +0.0 5,008,926 - Psyr_4206 0.12 -0.1 5,008,926 - Psyr_4206 0.12 +0.6 5,008,926 - Psyr_4206 0.12 +1.9 5,008,926 - Psyr_4206 0.12 -1.5 5,008,926 - Psyr_4206 0.12 +2.9 5,009,020 + Psyr_4206 0.20 -0.1 5,009,020 + Psyr_4206 0.20 -0.2 5,009,020 + Psyr_4206 0.20 +0.2 5,009,020 + Psyr_4206 0.20 -0.5 5,009,020 + Psyr_4206 0.20 +0.9 5,009,020 + Psyr_4206 0.20 -0.2 5,009,020 + Psyr_4206 0.20 +0.8 5,009,020 + Psyr_4206 0.20 +0.6 5,009,020 + Psyr_4206 0.20 +2.0 5,009,020 + Psyr_4206 0.20 +0.9 5,009,020 + Psyr_4206 0.20 -0.4 5,009,020 + Psyr_4206 0.20 +0.1 5,009,020 + Psyr_4206 0.20 -0.2 5,009,021 - Psyr_4206 0.20 +1.0 5,009,021 - Psyr_4206 0.20 -0.7 5,009,021 - Psyr_4206 0.20 -1.3 5,009,021 - Psyr_4206 0.20 +0.9 5,009,021 - Psyr_4206 0.20 -0.9 5,009,021 - Psyr_4206 0.20 -0.2 5,009,021 - Psyr_4206 0.20 -2.7 5,009,021 - Psyr_4206 0.20 -0.1 5,009,129 + Psyr_4206 0.30 +0.5 5,009,129 + Psyr_4206 0.30 -0.9 5,009,130 - Psyr_4206 0.30 +0.6 5,009,152 + Psyr_4206 0.32 -0.1 5,009,152 + Psyr_4206 0.32 -0.2 5,009,152 + Psyr_4206 0.32 +0.1 5,009,152 + Psyr_4206 0.32 +0.5 5,009,152 + Psyr_4206 0.32 -0.2 5,009,153 - Psyr_4206 0.32 -1.3 5,009,225 + Psyr_4206 0.39 +0.3 5,009,225 + Psyr_4206 0.39 -1.2 5,009,225 + Psyr_4206 0.39 -1.0 5,009,225 + Psyr_4206 0.39 -0.6 5,009,225 + Psyr_4206 0.39 +1.3 5,009,225 + Psyr_4206 0.39 -0.4 5,009,225 + Psyr_4206 0.39 +0.6 5,009,225 + Psyr_4206 0.39 +0.1 5,009,225 + Psyr_4206 0.39 +0.3 5,009,226 - Psyr_4206 0.39 +1.0 5,009,226 - Psyr_4206 0.39 +0.9 5,009,226 - Psyr_4206 0.39 -0.2 5,009,226 - Psyr_4206 0.39 -0.2 5,009,226 - Psyr_4206 0.39 +0.3 5,009,236 + Psyr_4206 0.40 -0.1 5,009,236 + Psyr_4206 0.40 -0.7 5,009,237 - Psyr_4206 0.40 -0.7 5,009,237 - Psyr_4206 0.40 +0.9 5,009,237 - Psyr_4206 0.40 -0.3 5,009,237 - Psyr_4206 0.40 +0.5 5,009,237 - Psyr_4206 0.40 -1.0 5,009,261 + Psyr_4206 0.42 -0.7 5,009,298 + Psyr_4206 0.46 +0.3 5,009,298 + Psyr_4206 0.46 -0.5 5,009,298 + Psyr_4206 0.46 -0.5 5,009,463 + Psyr_4206 0.61 -1.5 5,009,463 + Psyr_4206 0.61 -0.7 5,009,463 + Psyr_4206 0.61 +0.2 5,009,463 + Psyr_4206 0.61 -0.6 5,009,463 + Psyr_4206 0.61 +1.3 5,009,469 + Psyr_4206 0.62 +0.3 5,009,469 + Psyr_4206 0.62 -0.8 5,009,511 + Psyr_4206 0.65 +0.1 5,009,621 + Psyr_4206 0.76 -0.6 5,009,621 + Psyr_4206 0.76 -0.9 5,009,621 + Psyr_4206 0.76 +0.0 5,009,621 + Psyr_4206 0.76 +0.6 5,009,621 + Psyr_4206 0.76 +1.0 5,009,621 + Psyr_4206 0.76 +1.3 5,009,621 + Psyr_4206 0.76 +0.3 5,009,621 + Psyr_4206 0.76 -2.0 5,009,621 + Psyr_4206 0.76 +0.3 5,009,621 + Psyr_4206 0.76 +0.5 5,009,621 + Psyr_4206 0.76 +0.6 5,009,621 + Psyr_4206 0.76 +0.2 5,009,621 + Psyr_4206 0.76 -0.5 5,009,621 + Psyr_4206 0.76 +0.2 5,009,621 + Psyr_4206 0.76 -0.1 5,009,621 + Psyr_4206 0.76 -1.1 5,009,621 + Psyr_4206 0.76 -1.9 5,009,621 + Psyr_4206 0.76 +1.3 5,009,621 + Psyr_4206 0.76 -0.5 5,009,622 - Psyr_4206 0.76 +0.5 5,009,622 - Psyr_4206 0.76 -1.0 5,009,622 - Psyr_4206 0.76 +1.3 5,009,622 - Psyr_4206 0.76 +1.0 5,009,622 - Psyr_4206 0.76 -2.2 5,009,622 - Psyr_4206 0.76 +0.1 5,009,622 - Psyr_4206 0.76 -0.8 5,009,622 - Psyr_4206 0.76 -0.5 5,009,622 - Psyr_4206 0.76 -0.7 5,009,622 - Psyr_4206 0.76 +0.8 5,009,622 - Psyr_4206 0.76 +2.3 5,009,622 - Psyr_4206 0.76 -0.4 5,009,622 - Psyr_4206 0.76 -0.3 5,009,622 - Psyr_4206 0.76 -0.4 5,009,622 - Psyr_4206 0.76 -0.5 5,009,622 - Psyr_4206 0.76 -0.6 5,009,622 - Psyr_4206 0.76 -1.9 5,009,622 - Psyr_4206 0.76 -1.6 5,009,622 - Psyr_4206 0.76 +0.8 5,009,622 - Psyr_4206 0.76 -0.0 5,009,639 + Psyr_4206 0.77 -0.6 5,009,761 + Psyr_4206 0.88 -0.5 5,009,761 + Psyr_4206 0.88 -1.2 5,009,761 + Psyr_4206 0.88 -0.4 5,009,761 + Psyr_4206 0.88 -1.3 5,009,762 - Psyr_4206 0.88 -0.2 5,009,762 - Psyr_4206 0.88 +0.3 5,009,765 - Psyr_4206 0.89 +0.6 5,009,786 + -0.1 5,009,786 + -0.6 5,009,786 + -1.0 5,009,786 + -0.8 5,009,786 + +0.5 5,009,786 + -0.4 5,009,786 + +0.5 5,009,786 + -1.9 5,009,786 + -1.0 5,009,786 + -0.2 5,009,786 + -0.4 5,009,786 + +1.3 5,009,787 - -0.5 5,009,787 - +0.1 5,009,787 - -0.8 5,009,787 - -1.0 5,009,787 - +0.5 5,009,787 - +0.5 5,009,810 + +1.3 5,009,810 + -0.9 5,009,810 + -0.3 5,009,874 + -2.2 5,009,875 - -0.6 5,009,884 + +0.1 5,009,997 + Psyr_4207 0.22 +0.0 5,009,997 + Psyr_4207 0.22 +0.7 5,009,998 - Psyr_4207 0.22 -1.9 5,009,998 - Psyr_4207 0.22 +0.4 5,009,998 - Psyr_4207 0.22 -0.1 5,010,026 + Psyr_4207 0.29 +0.5 5,010,026 + Psyr_4207 0.29 +0.3 5,010,026 + Psyr_4207 0.29 +1.3 5,010,026 + Psyr_4207 0.29 -0.5 5,010,026 + Psyr_4207 0.29 +0.3 5,010,027 - Psyr_4207 0.29 -0.1 5,010,027 - Psyr_4207 0.29 -0.9 5,010,027 - Psyr_4207 0.29 -0.2 5,010,030 + Psyr_4207 0.30 +0.3 5,010,030 + Psyr_4207 0.30 -1.2 5,010,031 - Psyr_4207 0.30 +0.4 5,010,126 - Psyr_4207 0.52 -0.5 5,010,339 - -0.3 5,010,374 - -0.7 5,010,442 + -0.1 5,010,468 - +0.2 5,010,476 + +1.6 5,010,477 - -0.6 5,010,520 - +3.9 5,010,520 - -1.0 5,010,540 + -0.0 5,010,541 - -1.7 5,010,597 + +0.3 5,010,597 + -0.3 5,010,597 + +0.2 5,010,598 - +0.2 5,010,717 + +0.9 5,010,718 - -1.4 5,010,718 - -0.6 5,010,989 - Psyr_4208 0.12 +0.3 5,011,010 - Psyr_4208 0.13 -0.2 5,011,139 + Psyr_4208 0.18 +0.8 5,011,139 + Psyr_4208 0.18 +0.3 5,011,139 + Psyr_4208 0.18 -1.6 5,011,140 - Psyr_4208 0.18 +0.4 5,011,140 - Psyr_4208 0.18 -0.6 5,011,269 - Psyr_4208 0.24 +0.2 5,011,269 - Psyr_4208 0.24 -0.9
Or see this region's nucleotide sequence