Experiment: KB with Isosafrole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3897 and Psyr_3898 are separated by 126 nucleotides Psyr_3898 and Psyr_3899 are separated by 88 nucleotides Psyr_3899 and Psyr_3900 are separated by 132 nucleotides Psyr_3900 and Psyr_3901 are separated by 453 nucleotides
Psyr_3897: Psyr_3897 - Bacterioferritin, at 4,638,209 to 4,638,679
_3897
Psyr_3898: Psyr_3898 - Glutaredoxin-related protein, at 4,638,806 to 4,639,132
_3898
Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329
_3899
Psyr_3900: Psyr_3900 - conserved hypothetical protein, at 4,641,462 to 4,641,755
_3900
Psyr_3901: Psyr_3901 - ornithine carbamoyltransferase, at 4,642,209 to 4,643,129
_3901
Position (kb) 4639
4640
4641
4642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4638.281 kb on + strand, within Psyr_3897 at 4638.282 kb on - strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.342 kb on - strand, within Psyr_3897 at 4638.342 kb on - strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.640 kb on - strand at 4638.640 kb on - strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.742 kb on + strand at 4638.742 kb on + strand at 4638.743 kb on - strand at 4638.771 kb on - strand at 4638.780 kb on + strand at 4638.807 kb on + strand at 4639.186 kb on - strand at 4639.222 kb on + strand at 4639.222 kb on + strand at 4639.347 kb on + strand at 4639.549 kb on + strand, within Psyr_3899 at 4639.549 kb on + strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.798 kb on + strand, within Psyr_3899 at 4640.068 kb on + strand, within Psyr_3899 at 4640.068 kb on + strand, within Psyr_3899 at 4640.069 kb on - strand, within Psyr_3899 at 4640.069 kb on - strand, within Psyr_3899 at 4640.069 kb on - strand, within Psyr_3899 at 4640.069 kb on - strand, within Psyr_3899 at 4640.069 kb on - strand, within Psyr_3899 at 4640.435 kb on - strand, within Psyr_3899 at 4640.612 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.957 kb on - strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4641.007 kb on + strand, within Psyr_3899 at 4641.008 kb on - strand, within Psyr_3899 at 4641.049 kb on + strand, within Psyr_3899 at 4641.185 kb on + strand at 4641.186 kb on - strand at 4641.186 kb on - strand at 4641.380 kb on + strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.698 kb on + strand, within Psyr_3900 at 4641.698 kb on + strand, within Psyr_3900 at 4641.699 kb on - strand, within Psyr_3900 at 4641.699 kb on - strand, within Psyr_3900 at 4641.733 kb on - strand at 4641.733 kb on - strand at 4641.775 kb on + strand at 4641.775 kb on + strand at 4641.775 kb on + strand at 4641.780 kb on + strand at 4641.780 kb on + strand at 4641.794 kb on + strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.797 kb on - strand at 4641.896 kb on + strand at 4641.900 kb on - strand at 4641.900 kb on - strand at 4641.900 kb on - strand at 4641.926 kb on + strand at 4641.926 kb on + strand at 4641.927 kb on - strand at 4641.978 kb on - strand at 4642.036 kb on + strand at 4642.036 kb on + strand at 4642.036 kb on + strand at 4642.037 kb on + strand at 4642.039 kb on + strand at 4642.091 kb on + strand at 4642.174 kb on + strand at 4642.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM remove 4,638,281 + Psyr_3897 0.15 -1.0 4,638,282 - Psyr_3897 0.15 -1.1 4,638,302 + Psyr_3897 0.20 +1.8 4,638,303 - Psyr_3897 0.20 -1.0 4,638,303 - Psyr_3897 0.20 -0.7 4,638,341 + Psyr_3897 0.28 +0.0 4,638,341 + Psyr_3897 0.28 +0.1 4,638,341 + Psyr_3897 0.28 -0.3 4,638,341 + Psyr_3897 0.28 -0.3 4,638,342 - Psyr_3897 0.28 -0.7 4,638,342 - Psyr_3897 0.28 -0.6 4,638,343 + Psyr_3897 0.28 +0.3 4,638,343 + Psyr_3897 0.28 -0.7 4,638,344 - Psyr_3897 0.29 -0.5 4,638,344 - Psyr_3897 0.29 -0.5 4,638,344 - Psyr_3897 0.29 -1.8 4,638,368 + Psyr_3897 0.34 -1.1 4,638,369 - Psyr_3897 0.34 -0.5 4,638,369 - Psyr_3897 0.34 -1.6 4,638,369 - Psyr_3897 0.34 -0.9 4,638,640 - -0.8 4,638,640 - +0.5 4,638,653 + -0.9 4,638,653 + -0.4 4,638,653 + +0.4 4,638,653 + +1.5 4,638,654 - +1.2 4,638,654 - -0.2 4,638,654 - -1.0 4,638,654 - -1.6 4,638,654 - -1.2 4,638,742 + +0.4 4,638,742 + +0.9 4,638,743 - -0.5 4,638,771 - +0.4 4,638,780 + -0.8 4,638,807 + -0.5 4,639,186 - +0.3 4,639,222 + -0.8 4,639,222 + -0.2 4,639,347 + -0.4 4,639,549 + Psyr_3899 0.16 +1.0 4,639,549 + Psyr_3899 0.16 +0.2 4,639,550 - Psyr_3899 0.16 +0.3 4,639,550 - Psyr_3899 0.16 +1.2 4,639,550 - Psyr_3899 0.16 -0.8 4,639,550 - Psyr_3899 0.16 +1.0 4,639,550 - Psyr_3899 0.16 -0.1 4,639,798 + Psyr_3899 0.27 -0.3 4,640,068 + Psyr_3899 0.40 +0.9 4,640,068 + Psyr_3899 0.40 +0.2 4,640,069 - Psyr_3899 0.40 -1.1 4,640,069 - Psyr_3899 0.40 -2.8 4,640,069 - Psyr_3899 0.40 -0.7 4,640,069 - Psyr_3899 0.40 +0.4 4,640,069 - Psyr_3899 0.40 +0.2 4,640,435 - Psyr_3899 0.58 +0.2 4,640,612 + Psyr_3899 0.66 +0.5 4,640,869 + Psyr_3899 0.78 -0.5 4,640,869 + Psyr_3899 0.78 +1.0 4,640,869 + Psyr_3899 0.78 -0.7 4,640,869 + Psyr_3899 0.78 +1.0 4,640,869 + Psyr_3899 0.78 +0.6 4,640,870 - Psyr_3899 0.78 -0.4 4,640,870 - Psyr_3899 0.78 +0.1 4,640,870 - Psyr_3899 0.78 +0.2 4,640,870 - Psyr_3899 0.78 +0.9 4,640,956 + Psyr_3899 0.82 +1.3 4,640,956 + Psyr_3899 0.82 +0.6 4,640,956 + Psyr_3899 0.82 +0.2 4,640,956 + Psyr_3899 0.82 +0.8 4,640,957 - Psyr_3899 0.82 -1.4 4,640,984 + Psyr_3899 0.84 +0.8 4,640,984 + Psyr_3899 0.84 +0.6 4,640,984 + Psyr_3899 0.84 +0.6 4,640,984 + Psyr_3899 0.84 -0.2 4,640,985 - Psyr_3899 0.84 -0.8 4,640,985 - Psyr_3899 0.84 +0.6 4,641,007 + Psyr_3899 0.85 +1.2 4,641,008 - Psyr_3899 0.85 -0.7 4,641,049 + Psyr_3899 0.87 +0.5 4,641,185 + +1.1 4,641,186 - +2.2 4,641,186 - +0.1 4,641,380 + +0.8 4,641,381 - -0.4 4,641,381 - -0.5 4,641,698 + Psyr_3900 0.80 +2.5 4,641,698 + Psyr_3900 0.80 +0.0 4,641,699 - Psyr_3900 0.81 +0.4 4,641,699 - Psyr_3900 0.81 -0.4 4,641,733 - -0.8 4,641,733 - -0.0 4,641,775 + -0.5 4,641,775 + +1.3 4,641,775 + +0.1 4,641,780 + +0.3 4,641,780 + -0.6 4,641,794 + +1.2 4,641,795 - +0.5 4,641,795 - -2.3 4,641,795 - +0.5 4,641,795 - -0.7 4,641,795 - -0.3 4,641,795 - -0.8 4,641,795 - +0.1 4,641,795 - -0.1 4,641,797 - -0.9 4,641,896 + +0.5 4,641,900 - -0.4 4,641,900 - +0.7 4,641,900 - -0.2 4,641,926 + -0.2 4,641,926 + +0.1 4,641,927 - -0.1 4,641,978 - +0.4 4,642,036 + -0.2 4,642,036 + +0.2 4,642,036 + -0.1 4,642,037 + -0.5 4,642,039 + -0.8 4,642,091 + +0.1 4,642,174 + -0.5 4,642,200 + -1.4
Or see this region's nucleotide sequence