Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2976

Experiment: KB with Isosafrole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2974 and Psyr_2975 are separated by 124 nucleotidesPsyr_2975 and Psyr_2976 are separated by 110 nucleotidesPsyr_2976 and Psyr_2977 are separated by 177 nucleotides Psyr_2974: Psyr_2974 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,566,107 to 3,567,669 _2974 Psyr_2975: Psyr_2975 - Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, at 3,567,794 to 3,568,357 _2975 Psyr_2976: Psyr_2976 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 3,568,468 to 3,569,427 _2976 Psyr_2977: Psyr_2977 - cointegrate resolution protein T, at 3,569,605 to 3,570,615 _2977 Position (kb) 3568 3569 3570Strain fitness (log2 ratio) -2 -1 0 1 2at 3567.632 kb on + strandat 3567.633 kb on - strandat 3567.652 kb on - strandat 3567.701 kb on + strandat 3567.752 kb on + strandat 3567.832 kb on + strandat 3567.888 kb on + strand, within Psyr_2975at 3567.889 kb on - strand, within Psyr_2975at 3567.889 kb on - strand, within Psyr_2975at 3568.028 kb on + strand, within Psyr_2975at 3568.029 kb on - strand, within Psyr_2975at 3568.029 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.186 kb on - strand, within Psyr_2975at 3568.251 kb on - strand, within Psyr_2975at 3568.251 kb on - strand, within Psyr_2975at 3568.335 kb on - strandat 3568.335 kb on - strandat 3568.351 kb on + strandat 3568.361 kb on + strandat 3568.362 kb on - strandat 3568.363 kb on + strandat 3568.363 kb on + strandat 3568.363 kb on + strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.411 kb on - strandat 3568.488 kb on + strandat 3568.551 kb on - strandat 3568.551 kb on - strandat 3568.582 kb on + strand, within Psyr_2976at 3568.583 kb on - strand, within Psyr_2976at 3568.583 kb on - strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.664 kb on + strand, within Psyr_2976at 3568.665 kb on - strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.792 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.819 kb on - strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.862 kb on + strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.948 kb on + strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3569.110 kb on + strand, within Psyr_2976at 3569.110 kb on + strand, within Psyr_2976at 3569.110 kb on + strand, within Psyr_2976at 3569.409 kb on - strandat 3569.498 kb on + strandat 3569.562 kb on - strandat 3569.710 kb on - strand, within Psyr_2977at 3569.850 kb on + strand, within Psyr_2977at 3570.020 kb on + strand, within Psyr_2977at 3570.020 kb on + strand, within Psyr_2977at 3570.020 kb on + strand, within Psyr_2977at 3570.021 kb on - strand, within Psyr_2977at 3570.021 kb on - strand, within Psyr_2977

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM
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3,567,632 + -0.2
3,567,633 - -0.3
3,567,652 - -0.5
3,567,701 + -1.5
3,567,752 + -0.3
3,567,832 + -0.7
3,567,888 + Psyr_2975 0.17 +0.4
3,567,889 - Psyr_2975 0.17 +0.7
3,567,889 - Psyr_2975 0.17 -0.9
3,568,028 + Psyr_2975 0.41 +0.4
3,568,029 - Psyr_2975 0.42 +0.5
3,568,029 - Psyr_2975 0.42 -1.3
3,568,078 - Psyr_2975 0.50 +0.9
3,568,153 - Psyr_2975 0.64 +0.6
3,568,153 - Psyr_2975 0.64 +1.1
3,568,153 - Psyr_2975 0.64 +0.9
3,568,153 - Psyr_2975 0.64 +0.3
3,568,153 - Psyr_2975 0.64 +0.3
3,568,153 - Psyr_2975 0.64 -0.6
3,568,153 - Psyr_2975 0.64 +0.9
3,568,185 + Psyr_2975 0.69 -0.8
3,568,185 + Psyr_2975 0.69 +0.5
3,568,186 - Psyr_2975 0.70 -1.3
3,568,251 - Psyr_2975 0.81 +0.7
3,568,251 - Psyr_2975 0.81 -1.8
3,568,335 - +0.1
3,568,335 - -0.3
3,568,351 + +0.4
3,568,361 + -0.8
3,568,362 - -0.5
3,568,363 + +1.1
3,568,363 + -0.5
3,568,363 + +1.1
3,568,364 - +0.1
3,568,364 - +0.1
3,568,364 - -0.2
3,568,364 - +1.8
3,568,364 - -0.3
3,568,411 - +1.6
3,568,488 + +0.3
3,568,551 - -0.4
3,568,551 - -0.0
3,568,582 + Psyr_2976 0.12 +0.8
3,568,583 - Psyr_2976 0.12 +0.5
3,568,583 - Psyr_2976 0.12 +0.3
3,568,586 + Psyr_2976 0.12 +1.6
3,568,586 + Psyr_2976 0.12 -0.4
3,568,586 + Psyr_2976 0.12 +0.7
3,568,586 + Psyr_2976 0.12 +0.3
3,568,586 + Psyr_2976 0.12 -0.7
3,568,586 + Psyr_2976 0.12 -2.3
3,568,587 - Psyr_2976 0.12 +0.4
3,568,587 - Psyr_2976 0.12 -0.4
3,568,587 - Psyr_2976 0.12 -0.5
3,568,587 - Psyr_2976 0.12 +0.2
3,568,664 + Psyr_2976 0.20 -0.1
3,568,665 - Psyr_2976 0.21 +2.1
3,568,747 + Psyr_2976 0.29 -1.3
3,568,747 + Psyr_2976 0.29 +0.8
3,568,748 - Psyr_2976 0.29 -0.2
3,568,792 + Psyr_2976 0.34 -0.2
3,568,816 + Psyr_2976 0.36 +0.3
3,568,816 + Psyr_2976 0.36 +1.1
3,568,816 + Psyr_2976 0.36 +0.4
3,568,816 + Psyr_2976 0.36 +1.8
3,568,816 + Psyr_2976 0.36 +0.3
3,568,816 + Psyr_2976 0.36 -0.6
3,568,816 + Psyr_2976 0.36 -1.5
3,568,816 + Psyr_2976 0.36 -1.3
3,568,816 + Psyr_2976 0.36 -0.4
3,568,817 - Psyr_2976 0.36 +0.1
3,568,817 - Psyr_2976 0.36 +0.3
3,568,817 - Psyr_2976 0.36 -0.9
3,568,817 - Psyr_2976 0.36 +0.5
3,568,817 - Psyr_2976 0.36 +0.2
3,568,817 - Psyr_2976 0.36 +0.1
3,568,817 - Psyr_2976 0.36 +0.9
3,568,817 - Psyr_2976 0.36 +0.8
3,568,817 - Psyr_2976 0.36 -1.1
3,568,818 + Psyr_2976 0.36 +0.4
3,568,818 + Psyr_2976 0.36 -0.3
3,568,818 + Psyr_2976 0.36 +0.1
3,568,818 + Psyr_2976 0.36 -0.8
3,568,819 - Psyr_2976 0.37 -0.1
3,568,820 + Psyr_2976 0.37 +0.4
3,568,820 + Psyr_2976 0.37 -0.8
3,568,820 + Psyr_2976 0.37 -1.8
3,568,820 + Psyr_2976 0.37 -0.9
3,568,821 - Psyr_2976 0.37 +0.1
3,568,821 - Psyr_2976 0.37 -0.1
3,568,821 - Psyr_2976 0.37 +0.2
3,568,821 - Psyr_2976 0.37 -0.3
3,568,862 + Psyr_2976 0.41 -0.1
3,568,908 - Psyr_2976 0.46 +1.1
3,568,908 - Psyr_2976 0.46 +0.5
3,568,948 + Psyr_2976 0.50 -0.1
3,568,949 - Psyr_2976 0.50 -0.2
3,568,949 - Psyr_2976 0.50 +1.1
3,569,110 + Psyr_2976 0.67 -1.5
3,569,110 + Psyr_2976 0.67 +0.4
3,569,110 + Psyr_2976 0.67 +0.3
3,569,409 - +0.5
3,569,498 + -0.6
3,569,562 - -0.4
3,569,710 - Psyr_2977 0.10 -0.5
3,569,850 + Psyr_2977 0.24 -1.1
3,570,020 + Psyr_2977 0.41 -1.5
3,570,020 + Psyr_2977 0.41 -0.7
3,570,020 + Psyr_2977 0.41 +0.4
3,570,021 - Psyr_2977 0.41 +0.9
3,570,021 - Psyr_2977 0.41 +1.9

Or see this region's nucleotide sequence