Experiment: LB Anaerobic with Furaltadone 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcB and glcG are separated by 21 nucleotides glcG and glcF are separated by 4 nucleotides glcF and glcE are separated by 10 nucleotides
b2976: glcB - malate synthase (NCBI), at 3,119,656 to 3,121,827
glcB
b2977: glcG - hypothetical protein (NCBI), at 3,121,849 to 3,122,253
glcG
b4467: glcF - glycolate oxidase iron-sulfur subunit (NCBI), at 3,122,258 to 3,123,481
glcF
b4468: glcE - glycolate oxidase FAD binding subunit (NCBI), at 3,123,492 to 3,124,544
glcE
Position (kb)
3122
3123
3124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3121.258 kb on - strand, within glcB at 3121.258 kb on - strand at 3121.269 kb on + strand, within glcB at 3121.269 kb on + strand, within glcB at 3121.383 kb on - strand, within glcB at 3121.407 kb on - strand, within glcB at 3121.408 kb on + strand, within glcB at 3121.419 kb on - strand, within glcB at 3121.419 kb on - strand, within glcB at 3121.556 kb on + strand, within glcB at 3121.564 kb on - strand, within glcB at 3121.574 kb on - strand, within glcB at 3121.672 kb on - strand at 3121.735 kb on + strand at 3121.735 kb on + strand at 3121.812 kb on - strand at 3121.812 kb on - strand at 3121.863 kb on - strand at 3121.877 kb on + strand at 3121.976 kb on + strand, within glcG at 3121.976 kb on + strand, within glcG at 3121.992 kb on - strand, within glcG at 3121.992 kb on - strand, within glcG at 3122.025 kb on + strand, within glcG at 3122.025 kb on + strand, within glcG at 3122.033 kb on + strand, within glcG at 3122.069 kb on + strand, within glcG at 3122.319 kb on + strand at 3122.433 kb on - strand, within glcF at 3122.433 kb on - strand, within glcF at 3122.531 kb on + strand, within glcF at 3122.556 kb on + strand, within glcF at 3122.567 kb on + strand, within glcF at 3122.704 kb on + strand, within glcF at 3122.711 kb on - strand, within glcF at 3122.861 kb on + strand, within glcF at 3122.886 kb on - strand, within glcF at 3122.908 kb on - strand, within glcF at 3122.908 kb on - strand, within glcF at 3122.940 kb on + strand, within glcF at 3122.940 kb on + strand, within glcF at 3122.940 kb on + strand, within glcF at 3122.981 kb on + strand, within glcF at 3122.981 kb on + strand, within glcF at 3122.981 kb on + strand, within glcF at 3123.039 kb on - strand, within glcF at 3123.217 kb on + strand, within glcF at 3123.219 kb on + strand, within glcF at 3123.329 kb on - strand, within glcF at 3123.329 kb on - strand, within glcF at 3123.347 kb on - strand, within glcF at 3123.517 kb on + strand at 3123.517 kb on + strand at 3123.555 kb on - strand at 3123.555 kb on - strand at 3123.743 kb on + strand, within glcE at 3123.761 kb on - strand, within glcE at 3123.800 kb on + strand, within glcE at 3123.800 kb on + strand, within glcE at 3123.930 kb on - strand, within glcE at 3123.930 kb on - strand, within glcE at 3123.945 kb on + strand, within glcE at 3124.288 kb on - strand, within glcE at 3124.306 kb on + strand, within glcE
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM remove 3,121,258 - glcB b2976 0.74 -1.9 3,121,258 - +2.7 3,121,269 + glcB b2976 0.74 -0.7 3,121,269 + glcB b2976 0.74 -0.4 3,121,383 - glcB b2976 0.80 -0.3 3,121,407 - glcB b2976 0.81 -0.0 3,121,408 + glcB b2976 0.81 +1.8 3,121,419 - glcB b2976 0.81 +0.1 3,121,419 - glcB b2976 0.81 -1.4 3,121,556 + glcB b2976 0.87 -0.9 3,121,564 - glcB b2976 0.88 -0.4 3,121,574 - glcB b2976 0.88 -1.2 3,121,672 - -0.0 3,121,735 + -0.1 3,121,735 + +1.7 3,121,812 - -0.7 3,121,812 - -0.8 3,121,863 - -1.1 3,121,877 + -0.3 3,121,976 + glcG b2977 0.31 -1.9 3,121,976 + glcG b2977 0.31 +1.5 3,121,992 - glcG b2977 0.35 +0.2 3,121,992 - glcG b2977 0.35 +0.9 3,122,025 + glcG b2977 0.43 -0.8 3,122,025 + glcG b2977 0.43 +0.1 3,122,033 + glcG b2977 0.45 -1.0 3,122,069 + glcG b2977 0.54 +0.6 3,122,319 + -1.5 3,122,433 - glcF b4467 0.14 -0.4 3,122,433 - glcF b4467 0.14 +2.1 3,122,531 + glcF b4467 0.22 -0.6 3,122,556 + glcF b4467 0.24 +0.3 3,122,567 + glcF b4467 0.25 -0.1 3,122,704 + glcF b4467 0.36 -1.2 3,122,711 - glcF b4467 0.37 -1.4 3,122,861 + glcF b4467 0.49 -3.0 3,122,886 - glcF b4467 0.51 -0.7 3,122,908 - glcF b4467 0.53 -0.6 3,122,908 - glcF b4467 0.53 +0.0 3,122,940 + glcF b4467 0.56 -0.1 3,122,940 + glcF b4467 0.56 +0.4 3,122,940 + glcF b4467 0.56 -2.1 3,122,981 + glcF b4467 0.59 -1.2 3,122,981 + glcF b4467 0.59 +0.7 3,122,981 + glcF b4467 0.59 +1.1 3,123,039 - glcF b4467 0.64 -2.2 3,123,217 + glcF b4467 0.78 -0.4 3,123,219 + glcF b4467 0.79 -0.8 3,123,329 - glcF b4467 0.88 -0.2 3,123,329 - glcF b4467 0.88 -1.2 3,123,347 - glcF b4467 0.89 -0.4 3,123,517 + -1.7 3,123,517 + -1.4 3,123,555 - -2.0 3,123,555 - +0.4 3,123,743 + glcE b4468 0.24 +0.2 3,123,761 - glcE b4468 0.26 +2.0 3,123,800 + glcE b4468 0.29 +1.8 3,123,800 + glcE b4468 0.29 +0.8 3,123,930 - glcE b4468 0.42 -0.1 3,123,930 - glcE b4468 0.42 -1.4 3,123,945 + glcE b4468 0.43 -0.4 3,124,288 - glcE b4468 0.76 -0.4 3,124,306 + glcE b4468 0.77 +0.1
Or see this region's nucleotide sequence