Experiment: LB Anaerobic with Furaltadone 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbF and yjbG overlap by 4 nucleotides yjbG and yjbH overlap by 1 nucleotides yjbH and yjbT are separated by 46 nucleotides yjbT and yjbA are separated by 269 nucleotides
b4027: yjbF - orf, hypothetical protein (VIMSS), at 4,234,285 to 4,234,923
yjbF
b4028: yjbG - hypothetical protein (NCBI), at 4,234,920 to 4,235,657
yjbG
b4029: yjbH - predicted porin (NCBI), at 4,235,657 to 4,237,753
yjbH
b4620: yjbT - hypothetical protein, no homologs (RefSeq), at 4,237,800 to 4,238,078
yjbT
b4030: yjbA - phosphate-starvation-inducible protein PsiE (NCBI), at 4,238,348 to 4,238,758
yjbA
Position (kb)
4235
4236
4237
4238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4234.668 kb on + strand, within yjbF at 4234.668 kb on + strand, within yjbF at 4234.676 kb on - strand, within yjbF at 4234.676 kb on - strand, within yjbF at 4234.698 kb on - strand, within yjbF at 4234.698 kb on - strand, within yjbF at 4234.722 kb on - strand, within yjbF at 4234.821 kb on + strand, within yjbF at 4234.829 kb on - strand, within yjbF at 4235.042 kb on + strand, within yjbG at 4235.053 kb on + strand, within yjbG at 4235.053 kb on + strand, within yjbG at 4235.072 kb on - strand, within yjbG at 4235.147 kb on + strand, within yjbG at 4235.164 kb on + strand, within yjbG at 4235.164 kb on + strand, within yjbG at 4235.252 kb on - strand, within yjbG at 4235.341 kb on + strand, within yjbG at 4235.374 kb on - strand, within yjbG at 4235.391 kb on - strand, within yjbG at 4235.397 kb on - strand, within yjbG at 4235.424 kb on - strand, within yjbG at 4235.544 kb on - strand, within yjbG at 4235.591 kb on + strand at 4235.591 kb on + strand at 4235.607 kb on + strand at 4235.607 kb on + strand at 4235.899 kb on - strand, within yjbH at 4236.051 kb on + strand, within yjbH at 4236.051 kb on + strand, within yjbH at 4236.051 kb on + strand, within yjbH at 4236.051 kb on + strand, within yjbH at 4236.056 kb on + strand, within yjbH at 4236.069 kb on - strand, within yjbH at 4236.083 kb on - strand, within yjbH at 4236.100 kb on - strand, within yjbH at 4236.108 kb on + strand, within yjbH at 4236.260 kb on - strand, within yjbH at 4236.263 kb on + strand, within yjbH at 4236.417 kb on + strand, within yjbH at 4236.447 kb on - strand, within yjbH at 4236.505 kb on - strand, within yjbH at 4236.505 kb on - strand, within yjbH at 4236.571 kb on - strand, within yjbH at 4236.605 kb on - strand, within yjbH at 4236.669 kb on + strand, within yjbH at 4236.672 kb on - strand, within yjbH at 4236.906 kb on - strand, within yjbH at 4236.944 kb on + strand, within yjbH at 4236.944 kb on + strand, within yjbH at 4236.992 kb on - strand, within yjbH at 4236.992 kb on - strand, within yjbH at 4237.034 kb on + strand, within yjbH at 4237.113 kb on + strand, within yjbH at 4237.200 kb on - strand, within yjbH at 4237.233 kb on - strand, within yjbH at 4237.282 kb on - strand, within yjbH at 4237.326 kb on + strand, within yjbH at 4237.326 kb on + strand, within yjbH at 4237.406 kb on + strand, within yjbH at 4237.440 kb on - strand, within yjbH at 4237.472 kb on - strand, within yjbH at 4237.488 kb on + strand, within yjbH at 4237.526 kb on - strand, within yjbH at 4237.533 kb on + strand, within yjbH at 4237.578 kb on - strand at 4237.578 kb on - strand at 4237.580 kb on - strand at 4237.667 kb on + strand at 4237.667 kb on + strand at 4237.781 kb on + strand at 4237.907 kb on - strand, within yjbT at 4237.911 kb on + strand, within yjbT at 4237.911 kb on + strand, within yjbT at 4237.931 kb on + strand, within yjbT at 4237.931 kb on + strand, within yjbT at 4237.950 kb on + strand, within yjbT at 4237.963 kb on - strand, within yjbT at 4238.017 kb on + strand, within yjbT at 4238.017 kb on + strand, within yjbT at 4238.320 kb on - strand at 4238.331 kb on + strand at 4238.331 kb on + strand at 4238.335 kb on + strand at 4238.360 kb on + strand at 4238.419 kb on + strand, within yjbA at 4238.419 kb on + strand, within yjbA at 4238.526 kb on - strand, within yjbA at 4238.600 kb on + strand, within yjbA at 4238.631 kb on + strand, within yjbA at 4238.631 kb on + strand, within yjbA at 4238.686 kb on + strand, within yjbA at 4238.686 kb on + strand, within yjbA at 4238.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM remove 4,234,668 + yjbF b4027 0.60 +1.2 4,234,668 + yjbF b4027 0.60 -1.2 4,234,676 - yjbF b4027 0.61 -2.2 4,234,676 - yjbF b4027 0.61 -1.1 4,234,698 - yjbF b4027 0.65 +0.1 4,234,698 - yjbF b4027 0.65 +0.5 4,234,722 - yjbF b4027 0.68 -1.0 4,234,821 + yjbF b4027 0.84 -0.3 4,234,829 - yjbF b4027 0.85 -0.5 4,235,042 + yjbG b4028 0.17 -3.1 4,235,053 + yjbG b4028 0.18 -0.1 4,235,053 + yjbG b4028 0.18 +1.8 4,235,072 - yjbG b4028 0.21 +0.9 4,235,147 + yjbG b4028 0.31 -1.0 4,235,164 + yjbG b4028 0.33 -1.7 4,235,164 + yjbG b4028 0.33 -0.3 4,235,252 - yjbG b4028 0.45 +0.0 4,235,341 + yjbG b4028 0.57 -0.3 4,235,374 - yjbG b4028 0.62 -1.0 4,235,391 - yjbG b4028 0.64 +0.7 4,235,397 - yjbG b4028 0.65 -2.3 4,235,424 - yjbG b4028 0.68 +0.8 4,235,544 - yjbG b4028 0.85 +0.5 4,235,591 + -0.6 4,235,591 + +1.8 4,235,607 + -1.1 4,235,607 + -1.1 4,235,899 - yjbH b4029 0.12 +0.0 4,236,051 + yjbH b4029 0.19 +0.8 4,236,051 + yjbH b4029 0.19 +0.2 4,236,051 + yjbH b4029 0.19 +1.0 4,236,051 + yjbH b4029 0.19 -1.0 4,236,056 + yjbH b4029 0.19 -2.9 4,236,069 - yjbH b4029 0.20 -0.8 4,236,083 - yjbH b4029 0.20 -1.1 4,236,100 - yjbH b4029 0.21 -1.6 4,236,108 + yjbH b4029 0.22 -1.9 4,236,260 - yjbH b4029 0.29 +0.1 4,236,263 + yjbH b4029 0.29 +0.6 4,236,417 + yjbH b4029 0.36 -1.3 4,236,447 - yjbH b4029 0.38 +0.1 4,236,505 - yjbH b4029 0.40 +1.8 4,236,505 - yjbH b4029 0.40 +0.7 4,236,571 - yjbH b4029 0.44 +0.6 4,236,605 - yjbH b4029 0.45 +0.3 4,236,669 + yjbH b4029 0.48 +1.7 4,236,672 - yjbH b4029 0.48 -0.3 4,236,906 - yjbH b4029 0.60 -0.3 4,236,944 + yjbH b4029 0.61 +0.9 4,236,944 + yjbH b4029 0.61 -0.8 4,236,992 - yjbH b4029 0.64 -1.9 4,236,992 - yjbH b4029 0.64 -1.1 4,237,034 + yjbH b4029 0.66 +0.5 4,237,113 + yjbH b4029 0.69 -0.7 4,237,200 - yjbH b4029 0.74 -0.8 4,237,233 - yjbH b4029 0.75 -1.3 4,237,282 - yjbH b4029 0.77 -1.3 4,237,326 + yjbH b4029 0.80 -0.2 4,237,326 + yjbH b4029 0.80 +0.8 4,237,406 + yjbH b4029 0.83 -2.3 4,237,440 - yjbH b4029 0.85 -0.7 4,237,472 - yjbH b4029 0.87 -2.2 4,237,488 + yjbH b4029 0.87 -1.4 4,237,526 - yjbH b4029 0.89 -3.0 4,237,533 + yjbH b4029 0.89 -0.4 4,237,578 - +0.8 4,237,578 - -0.7 4,237,580 - -1.1 4,237,667 + +0.0 4,237,667 + -1.7 4,237,781 + +0.3 4,237,907 - yjbT b4620 0.38 -0.2 4,237,911 + yjbT b4620 0.40 +0.6 4,237,911 + yjbT b4620 0.40 +1.1 4,237,931 + yjbT b4620 0.47 -0.6 4,237,931 + yjbT b4620 0.47 -0.7 4,237,950 + yjbT b4620 0.54 +0.6 4,237,963 - yjbT b4620 0.58 +0.2 4,238,017 + yjbT b4620 0.78 +0.0 4,238,017 + yjbT b4620 0.78 +0.9 4,238,320 - +0.1 4,238,331 + +0.5 4,238,331 + +0.1 4,238,335 + -0.9 4,238,360 + -1.1 4,238,419 + yjbA b4030 0.17 +0.3 4,238,419 + yjbA b4030 0.17 +0.3 4,238,526 - yjbA b4030 0.43 -0.7 4,238,600 + yjbA b4030 0.61 +1.1 4,238,631 + yjbA b4030 0.69 -0.3 4,238,631 + yjbA b4030 0.69 -0.4 4,238,686 + yjbA b4030 0.82 +1.8 4,238,686 + yjbA b4030 0.82 -1.7 4,238,718 + -0.1
Or see this region's nucleotide sequence