Strain Fitness in Escherichia coli BW25113 around b3256

Experiment: LB Anaerobic with Furaltadone 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyrdE and accB are separated by 404 nucleotidesaccB and accC are separated by 10 nucleotidesaccC and yhdT are separated by 108 nucleotidesyhdT and panF overlap by 11 nucleotides b4646: yrdE - no description, at 3,402,660 to 3,403,053 yrdE b3255: accB - acetyl-CoA carboxylase (NCBI), at 3,403,458 to 3,403,928 accB b3256: accC - acetyl-CoA carboxylase (NCBI), at 3,403,939 to 3,405,288 accC b3257: yhdT - conserved inner membrane protein (NCBI), at 3,405,397 to 3,405,639 yhdT b3258: panF - sodium/pantothenate symporter (VIMSS), at 3,405,629 to 3,407,080 panF Position (kb) 3403 3404 3405 3406Strain fitness (log2 ratio) -2 -1 0 1 2at 3403.197 kb on - strandat 3403.370 kb on + strandat 3403.372 kb on + strandat 3403.372 kb on + strandat 3403.374 kb on + strandat 3405.412 kb on + strandat 3405.459 kb on - strand, within yhdTat 3405.576 kb on + strand, within yhdTat 3405.576 kb on + strand, within yhdTat 3405.584 kb on - strand, within yhdTat 3405.584 kb on - strand, within yhdTat 3405.619 kb on + strandat 3405.634 kb on + strandat 3405.634 kb on + strandat 3405.759 kb on - strandat 3405.799 kb on - strand, within panFat 3405.799 kb on - strand, within panFat 3405.799 kb on - strand, within panFat 3405.799 kb on - strand, within panFat 3405.990 kb on + strand, within panFat 3406.039 kb on + strand, within panFat 3406.083 kb on - strand, within panFat 3406.146 kb on - strand, within panFat 3406.172 kb on + strand, within panFat 3406.172 kb on - strand, within panFat 3406.177 kb on + strand, within panFat 3406.177 kb on + strand, within panFat 3406.185 kb on - strand, within panFat 3406.187 kb on + strand, within panFat 3406.228 kb on - strand, within panFat 3406.246 kb on - strand, within panFat 3406.253 kb on + strand, within panFat 3406.253 kb on + strand, within panFat 3406.268 kb on + strand, within panFat 3406.271 kb on - strand, within panFat 3406.276 kb on - strand, within panF

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM
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3,403,197 - -1.4
3,403,370 + +1.4
3,403,372 + +1.0
3,403,372 + -0.1
3,403,374 + -0.1
3,405,412 + +1.2
3,405,459 - yhdT b3257 0.26 -0.4
3,405,576 + yhdT b3257 0.74 +1.1
3,405,576 + yhdT b3257 0.74 -0.8
3,405,584 - yhdT b3257 0.77 +0.1
3,405,584 - yhdT b3257 0.77 -0.4
3,405,619 + +0.3
3,405,634 + -0.9
3,405,634 + +0.1
3,405,759 - +0.2
3,405,799 - panF b3258 0.12 +0.4
3,405,799 - panF b3258 0.12 +1.4
3,405,799 - panF b3258 0.12 -0.1
3,405,799 - panF b3258 0.12 +0.1
3,405,990 + panF b3258 0.25 -0.2
3,406,039 + panF b3258 0.28 -0.2
3,406,083 - panF b3258 0.31 +1.4
3,406,146 - panF b3258 0.36 +2.0
3,406,172 + panF b3258 0.37 -1.6
3,406,172 - panF b3258 0.37 +1.0
3,406,177 + panF b3258 0.38 -1.5
3,406,177 + panF b3258 0.38 +0.8
3,406,185 - panF b3258 0.38 +1.0
3,406,187 + panF b3258 0.38 +2.0
3,406,228 - panF b3258 0.41 +0.7
3,406,246 - panF b3258 0.42 -2.0
3,406,253 + panF b3258 0.43 +0.9
3,406,253 + panF b3258 0.43 +0.4
3,406,268 + panF b3258 0.44 +1.0
3,406,271 - panF b3258 0.44 -0.6
3,406,276 - panF b3258 0.45 +0.2

Or see this region's nucleotide sequence