Strain Fitness in Escherichia coli BW25113 around b1387

Experiment: LB Anaerobic with Furaltadone 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttynA and maoC are separated by 247 nucleotidesmaoC and paaA are separated by 284 nucleotides b1386: tynA - tyramine oxidase, copper-requiring (NCBI), at 1,447,100 to 1,449,373 tynA b1387: maoC - fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI), at 1,449,621 to 1,451,666 maoC b1388: paaA - predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI), at 1,451,951 to 1,452,880 paaA Position (kb) 1449 1450 1451 1452Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1448.640 kb on + strand, within tynAat 1448.730 kb on - strand, within tynAat 1448.730 kb on - strand, within tynAat 1448.757 kb on - strand, within tynAat 1449.263 kb on + strandat 1449.263 kb on - strandat 1449.426 kb on - strandat 1449.443 kb on - strandat 1449.459 kb on + strandat 1449.459 kb on + strandat 1449.468 kb on + strandat 1449.545 kb on - strandat 1449.564 kb on + strandat 1449.685 kb on + strandat 1449.844 kb on - strand, within maoCat 1450.266 kb on - strand, within maoCat 1450.268 kb on + strand, within maoCat 1450.276 kb on - strand, within maoCat 1450.292 kb on + strand, within maoCat 1450.484 kb on + strand, within maoCat 1450.534 kb on - strand, within maoCat 1451.006 kb on - strand, within maoCat 1451.232 kb on + strand, within maoCat 1451.232 kb on + strand, within maoCat 1451.305 kb on + strand, within maoCat 1451.595 kb on + strandat 1451.984 kb on + strandat 1451.984 kb on + strandat 1452.190 kb on - strand, within paaAat 1452.425 kb on - strand, within paaAat 1452.529 kb on - strand, within paaAat 1452.529 kb on - strand, within paaAat 1452.655 kb on + strand, within paaA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM
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1,448,640 + tynA b1386 0.68 -2.1
1,448,730 - tynA b1386 0.72 +0.9
1,448,730 - tynA b1386 0.72 +1.5
1,448,757 - tynA b1386 0.73 +0.6
1,449,263 + -0.6
1,449,263 - +0.0
1,449,426 - +0.3
1,449,443 - -1.5
1,449,459 + +0.4
1,449,459 + +1.0
1,449,468 + -1.2
1,449,545 - +1.8
1,449,564 + -0.2
1,449,685 + -0.7
1,449,844 - maoC b1387 0.11 -0.7
1,450,266 - maoC b1387 0.32 -0.0
1,450,268 + maoC b1387 0.32 -1.4
1,450,276 - maoC b1387 0.32 -0.3
1,450,292 + maoC b1387 0.33 +1.3
1,450,484 + maoC b1387 0.42 -0.0
1,450,534 - maoC b1387 0.45 +0.2
1,451,006 - maoC b1387 0.68 +0.4
1,451,232 + maoC b1387 0.79 +3.0
1,451,232 + maoC b1387 0.79 +0.2
1,451,305 + maoC b1387 0.82 -2.1
1,451,595 + -0.2
1,451,984 + +1.4
1,451,984 + -1.1
1,452,190 - paaA b1388 0.26 +1.2
1,452,425 - paaA b1388 0.51 -2.6
1,452,529 - paaA b1388 0.62 -1.6
1,452,529 - paaA b1388 0.62 +0.8
1,452,655 + paaA b1388 0.76 +0.9

Or see this region's nucleotide sequence