Strain Fitness in Escherichia coli BW25113 around b0933

Experiment: LB Anaerobic with Furaltadone 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpepN and ssuB are separated by 42 nucleotidesssuB and ycbM overlap by 4 nucleotidesycbM and ssuD are separated by 10 nucleotides b0932: pepN - aminopeptidase N (NCBI), at 989,845 to 992,457 pepN b0933: ssuB - alkanesulfonate transporter subunit (NCBI), at 992,500 to 993,267 ssuB b0934: ycbM - putative transport system permease protein (VIMSS), at 993,264 to 994,055 ycbM b0935: ssuD - alkanesulfonate monooxygenase (NCBI), at 994,066 to 995,211 ssuD Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1 2at 991.786 kb on - strand, within pepNat 991.816 kb on + strand, within pepNat 991.847 kb on + strand, within pepNat 991.847 kb on + strand, within pepNat 991.892 kb on - strand, within pepNat 991.892 kb on - strand, within pepNat 991.968 kb on + strand, within pepNat 992.043 kb on - strand, within pepNat 992.045 kb on - strand, within pepNat 992.135 kb on - strand, within pepNat 992.149 kb on + strand, within pepNat 992.402 kb on - strandat 992.438 kb on + strandat 992.582 kb on - strand, within ssuBat 992.676 kb on + strand, within ssuBat 992.681 kb on + strand, within ssuBat 992.712 kb on + strand, within ssuBat 992.928 kb on - strand, within ssuBat 993.003 kb on + strand, within ssuBat 993.003 kb on + strand, within ssuBat 993.056 kb on - strand, within ssuBat 993.078 kb on - strand, within ssuBat 993.103 kb on + strand, within ssuBat 993.239 kb on - strandat 993.526 kb on + strand, within ycbMat 993.729 kb on - strand, within ycbMat 993.913 kb on + strand, within ycbMat 994.024 kb on + strandat 994.033 kb on - strandat 994.089 kb on + strandat 994.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM
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991,786 - pepN b0932 0.74 -0.7
991,816 + pepN b0932 0.75 -0.3
991,847 + pepN b0932 0.77 -0.1
991,847 + pepN b0932 0.77 +0.1
991,892 - pepN b0932 0.78 -0.1
991,892 - pepN b0932 0.78 +0.1
991,968 + pepN b0932 0.81 -0.9
992,043 - pepN b0932 0.84 -0.3
992,045 - pepN b0932 0.84 -1.4
992,135 - pepN b0932 0.88 -1.1
992,149 + pepN b0932 0.88 -0.1
992,402 - -0.4
992,438 + -0.1
992,582 - ssuB b0933 0.11 -1.3
992,676 + ssuB b0933 0.23 -1.0
992,681 + ssuB b0933 0.24 -1.7
992,712 + ssuB b0933 0.28 -1.9
992,928 - ssuB b0933 0.56 +0.9
993,003 + ssuB b0933 0.65 -2.3
993,003 + ssuB b0933 0.65 -1.3
993,056 - ssuB b0933 0.72 +1.9
993,078 - ssuB b0933 0.75 +1.3
993,103 + ssuB b0933 0.79 -1.1
993,239 - +1.2
993,526 + ycbM b0934 0.33 -1.0
993,729 - ycbM b0934 0.59 -1.1
993,913 + ycbM b0934 0.82 +0.3
994,024 + +1.4
994,033 - +1.1
994,089 + -1.1
994,089 + -0.1

Or see this region's nucleotide sequence