Experiment: LB Anaerobic with Furaltadone 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycaQ and ycaR are separated by 51 nucleotides ycaR and kdsB overlap by 4 nucleotides kdsB and ycbJ are separated by 153 nucleotides
b0916: ycaQ - hypothetical protein (NCBI), at 968,612 to 969,844
ycaQ
b0917: ycaR - hypothetical protein (NCBI), at 969,896 to 970,078
ycaR
b0918: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase (NCBI), at 970,075 to 970,821
kdsB
b0919: ycbJ - hypothetical protein (NCBI), at 970,975 to 971,868
ycbJ
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.275 kb on - strand, within ycaQ at 969.282 kb on + strand, within ycaQ at 969.300 kb on - strand, within ycaQ at 969.300 kb on - strand, within ycaQ at 969.547 kb on + strand, within ycaQ at 969.547 kb on + strand, within ycaQ at 969.550 kb on + strand, within ycaQ at 969.555 kb on - strand, within ycaQ at 969.690 kb on + strand, within ycaQ at 969.690 kb on + strand, within ycaQ at 969.774 kb on + strand at 969.830 kb on - strand at 970.868 kb on - strand at 970.868 kb on - strand at 971.000 kb on + strand at 971.061 kb on + strand at 971.071 kb on + strand, within ycbJ at 971.221 kb on - strand, within ycbJ at 971.291 kb on + strand, within ycbJ at 971.291 kb on + strand, within ycbJ at 971.300 kb on + strand, within ycbJ at 971.300 kb on + strand, within ycbJ at 971.348 kb on - strand, within ycbJ at 971.348 kb on - strand, within ycbJ at 971.350 kb on + strand, within ycbJ at 971.382 kb on + strand, within ycbJ at 971.382 kb on + strand, within ycbJ at 971.426 kb on + strand, within ycbJ at 971.434 kb on - strand, within ycbJ at 971.436 kb on + strand, within ycbJ at 971.442 kb on + strand, within ycbJ at 971.442 kb on + strand, within ycbJ at 971.447 kb on + strand, within ycbJ at 971.447 kb on + strand, within ycbJ at 971.447 kb on + strand, within ycbJ at 971.706 kb on + strand, within ycbJ
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM remove 969,275 - ycaQ b0916 0.54 -1.0 969,282 + ycaQ b0916 0.54 -1.5 969,300 - ycaQ b0916 0.56 -2.3 969,300 - ycaQ b0916 0.56 +3.7 969,547 + ycaQ b0916 0.76 +0.1 969,547 + ycaQ b0916 0.76 +0.4 969,550 + ycaQ b0916 0.76 +0.7 969,555 - ycaQ b0916 0.76 -1.7 969,690 + ycaQ b0916 0.87 -1.4 969,690 + ycaQ b0916 0.87 -1.0 969,774 + +0.0 969,830 - -1.1 970,868 - +0.1 970,868 - +0.3 971,000 + +0.1 971,061 + +0.3 971,071 + ycbJ b0919 0.11 +1.5 971,221 - ycbJ b0919 0.28 +0.1 971,291 + ycbJ b0919 0.35 -0.5 971,291 + ycbJ b0919 0.35 +0.6 971,300 + ycbJ b0919 0.36 -1.4 971,300 + ycbJ b0919 0.36 -1.1 971,348 - ycbJ b0919 0.42 -1.7 971,348 - ycbJ b0919 0.42 +0.6 971,350 + ycbJ b0919 0.42 -1.9 971,382 + ycbJ b0919 0.46 -1.4 971,382 + ycbJ b0919 0.46 +0.3 971,426 + ycbJ b0919 0.50 +0.9 971,434 - ycbJ b0919 0.51 +1.5 971,436 + ycbJ b0919 0.52 -1.9 971,442 + ycbJ b0919 0.52 -1.2 971,442 + ycbJ b0919 0.52 +1.0 971,447 + ycbJ b0919 0.53 -0.3 971,447 + ycbJ b0919 0.53 -1.1 971,447 + ycbJ b0919 0.53 +0.6 971,706 + ycbJ b0919 0.82 +0.1
Or see this region's nucleotide sequence