Strain Fitness in Escherichia coli BW25113 around b0269

Experiment: LB Anaerobic with Furaltadone 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyagE and yagF are separated by 14 nucleotidesyagF and yagG are separated by 226 nucleotides b0268: yagE - 2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage (NCBI), at 281,502 to 282,410 yagE b0269: yagF - CP4-6 prophage; predicted dehydratase (NCBI), at 282,425 to 284,392 yagF b0270: yagG - CP4-6 prophage; predicted sugar transporter (NCBI), at 284,619 to 286,001 yagG Position (kb) 282 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 281.464 kb on + strandat 281.464 kb on + strandat 281.579 kb on + strandat 281.579 kb on + strandat 281.639 kb on - strand, within yagEat 281.664 kb on + strand, within yagEat 281.869 kb on + strand, within yagEat 282.021 kb on - strand, within yagEat 282.021 kb on - strand, within yagEat 282.072 kb on + strand, within yagEat 282.101 kb on + strand, within yagEat 282.109 kb on - strand, within yagEat 282.109 kb on - strand, within yagEat 282.114 kb on - strand, within yagEat 282.114 kb on - strand, within yagEat 282.297 kb on + strand, within yagEat 282.305 kb on + strand, within yagEat 282.321 kb on - strandat 282.321 kb on - strandat 282.449 kb on + strandat 282.524 kb on - strandat 282.524 kb on - strandat 282.553 kb on + strandat 282.591 kb on + strandat 282.684 kb on - strand, within yagFat 282.811 kb on + strand, within yagFat 282.811 kb on + strand, within yagFat 282.958 kb on - strand, within yagFat 283.075 kb on - strand, within yagFat 283.090 kb on - strand, within yagFat 283.154 kb on - strand, within yagFat 283.393 kb on + strand, within yagFat 283.411 kb on - strand, within yagFat 283.411 kb on - strand, within yagFat 283.434 kb on + strand, within yagFat 283.456 kb on - strand, within yagFat 283.584 kb on + strand, within yagFat 283.584 kb on + strand, within yagFat 283.731 kb on - strand, within yagFat 283.820 kb on + strand, within yagFat 283.835 kb on + strand, within yagFat 283.835 kb on + strand, within yagFat 284.022 kb on - strand, within yagFat 284.115 kb on - strand, within yagFat 284.150 kb on + strand, within yagFat 284.237 kb on + strandat 284.237 kb on + strandat 284.251 kb on - strandat 284.252 kb on + strandat 284.274 kb on + strandat 284.274 kb on + strandat 284.281 kb on + strandat 284.281 kb on + strandat 284.281 kb on + strandat 284.281 kb on + strandat 284.289 kb on - strandat 284.290 kb on - strandat 284.291 kb on + strandat 284.291 kb on + strandat 284.291 kb on + strandat 284.292 kb on - strandat 284.294 kb on - strandat 284.307 kb on + strandat 284.307 kb on + strandat 284.311 kb on - strandat 284.311 kb on - strandat 284.316 kb on + strandat 284.328 kb on + strandat 284.330 kb on + strandat 284.417 kb on + strandat 284.565 kb on + strandat 284.582 kb on - strandat 284.590 kb on - strandat 284.596 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.598 kb on + strandat 284.604 kb on - strandat 284.606 kb on - strandat 284.606 kb on - strandat 284.606 kb on - strandat 284.606 kb on - strandat 284.606 kb on - strandat 284.606 kb on - strandat 284.608 kb on - strandat 284.608 kb on - strandat 284.608 kb on - strandat 284.608 kb on - strandat 284.608 kb on - strandat 284.610 kb on + strandat 284.610 kb on + strandat 284.616 kb on - strandat 284.655 kb on + strandat 284.658 kb on - strandat 284.879 kb on + strand, within yagGat 284.879 kb on + strand, within yagGat 284.910 kb on + strand, within yagGat 284.938 kb on - strand, within yagGat 284.955 kb on + strand, within yagGat 284.975 kb on + strand, within yagGat 285.007 kb on - strand, within yagGat 285.007 kb on - strand, within yagGat 285.059 kb on - strand, within yagGat 285.190 kb on + strand, within yagGat 285.208 kb on - strand, within yagGat 285.246 kb on - strand, within yagG

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM
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281,464 + -0.5
281,464 + +1.7
281,579 + -0.5
281,579 + +1.1
281,639 - yagE b0268 0.15 -0.8
281,664 + yagE b0268 0.18 -0.0
281,869 + yagE b0268 0.40 -0.1
282,021 - yagE b0268 0.57 +1.7
282,021 - yagE b0268 0.57 +0.1
282,072 + yagE b0268 0.63 +1.9
282,101 + yagE b0268 0.66 -0.5
282,109 - yagE b0268 0.67 +0.4
282,109 - yagE b0268 0.67 -2.4
282,114 - yagE b0268 0.67 +0.8
282,114 - yagE b0268 0.67 -0.6
282,297 + yagE b0268 0.87 -0.0
282,305 + yagE b0268 0.88 -0.1
282,321 - -1.4
282,321 - +1.1
282,449 + +1.5
282,524 - -0.6
282,524 - -0.5
282,553 + -1.0
282,591 + +0.4
282,684 - yagF b0269 0.13 -1.1
282,811 + yagF b0269 0.20 -0.1
282,811 + yagF b0269 0.20 -0.8
282,958 - yagF b0269 0.27 +0.4
283,075 - yagF b0269 0.33 -0.5
283,090 - yagF b0269 0.34 -1.2
283,154 - yagF b0269 0.37 -0.5
283,393 + yagF b0269 0.49 -0.7
283,411 - yagF b0269 0.50 -0.6
283,411 - yagF b0269 0.50 +0.6
283,434 + yagF b0269 0.51 +0.3
283,456 - yagF b0269 0.52 -0.6
283,584 + yagF b0269 0.59 -0.5
283,584 + yagF b0269 0.59 +1.0
283,731 - yagF b0269 0.66 -0.7
283,820 + yagF b0269 0.71 +1.2
283,835 + yagF b0269 0.72 -0.5
283,835 + yagF b0269 0.72 -1.4
284,022 - yagF b0269 0.81 -0.5
284,115 - yagF b0269 0.86 -0.5
284,150 + yagF b0269 0.88 -1.2
284,237 + -1.1
284,237 + +1.9
284,251 - -0.8
284,252 + -0.9
284,274 + +0.1
284,274 + -0.6
284,281 + -0.3
284,281 + +1.0
284,281 + -2.4
284,281 + +0.1
284,289 - +1.4
284,290 - +0.3
284,291 + -0.1
284,291 + -0.1
284,291 + +0.3
284,292 - +1.2
284,294 - +0.2
284,307 + +0.1
284,307 + +0.2
284,311 - -1.5
284,311 - +0.4
284,316 + +0.0
284,328 + -0.5
284,330 + -0.0
284,417 + +1.1
284,565 + -0.5
284,582 - -0.2
284,590 - +0.4
284,596 + -0.5
284,598 + -1.6
284,598 + +2.2
284,598 + +0.1
284,598 + +0.2
284,598 + +0.8
284,598 + -0.1
284,598 + +0.1
284,604 - -1.2
284,606 - +0.5
284,606 - -0.8
284,606 - -0.4
284,606 - -1.2
284,606 - -0.0
284,606 - -0.4
284,608 - +0.4
284,608 - -0.5
284,608 - -2.1
284,608 - -0.0
284,608 - +1.0
284,610 + -1.2
284,610 + -2.2
284,616 - -0.9
284,655 + -0.5
284,658 - +1.8
284,879 + yagG b0270 0.19 -0.3
284,879 + yagG b0270 0.19 -0.8
284,910 + yagG b0270 0.21 +1.0
284,938 - yagG b0270 0.23 +0.5
284,955 + yagG b0270 0.24 -2.1
284,975 + yagG b0270 0.26 +0.7
285,007 - yagG b0270 0.28 -2.4
285,007 - yagG b0270 0.28 +0.1
285,059 - yagG b0270 0.32 -1.8
285,190 + yagG b0270 0.41 -1.2
285,208 - yagG b0270 0.43 +1.2
285,246 - yagG b0270 0.45 +1.1

Or see this region's nucleotide sequence