Strain Fitness in Escherichia coli BW25113 around b1757

Experiment: LB Anaerobic with Chloramphenicol 0.000001953125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynjC and ynjD overlap by 1 nucleotidesynjD and b1757 are separated by 66 nucleotidesb1757 and b1758 are separated by 8 nucleotidesb1758 and nudG are separated by 86 nucleotides b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771 ynjC b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424 ynjD b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798 b1757 b1758: b1758 - putative cytochrome oxidase (VIMSS), at 1,838,807 to 1,839,427 b1758 b1759: nudG - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase (NCBI), at 1,839,514 to 1,839,921 nudG Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -1 0 1at 1836.584 kb on - strand, within ynjCat 1836.773 kb on - strandat 1836.840 kb on - strand, within ynjDat 1837.048 kb on - strand, within ynjDat 1837.083 kb on + strand, within ynjDat 1837.152 kb on + strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.248 kb on + strand, within ynjDat 1837.272 kb on - strand, within ynjDat 1837.793 kb on + strand, within b1757at 1837.793 kb on + strand, within b1757at 1838.008 kb on - strand, within b1757at 1838.022 kb on + strand, within b1757at 1838.065 kb on - strand, within b1757at 1838.179 kb on + strand, within b1757at 1838.194 kb on - strand, within b1757at 1838.463 kb on + strand, within b1757at 1838.563 kb on + strand, within b1757at 1838.833 kb on + strandat 1838.833 kb on + strandat 1839.201 kb on + strand, within b1758at 1839.552 kb on - strandat 1839.552 kb on - strandat 1839.760 kb on - strand, within nudG

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Chloramphenicol 0.000001953125 mM
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1,836,584 - ynjC b1755 0.88 +1.7
1,836,773 - +1.1
1,836,840 - ynjD b1756 0.11 -0.5
1,837,048 - ynjD b1756 0.42 +0.6
1,837,083 + ynjD b1756 0.48 -0.7
1,837,152 + ynjD b1756 0.58 +0.5
1,837,203 - ynjD b1756 0.66 -1.1
1,837,203 - ynjD b1756 0.66 -0.6
1,837,248 + ynjD b1756 0.73 +0.5
1,837,272 - ynjD b1756 0.77 -0.7
1,837,793 + b1757 b1757 0.23 -0.7
1,837,793 + b1757 b1757 0.23 +0.1
1,838,008 - b1757 b1757 0.40 +0.0
1,838,022 + b1757 b1757 0.41 -0.3
1,838,065 - b1757 b1757 0.44 -0.3
1,838,179 + b1757 b1757 0.53 -0.5
1,838,194 - b1757 b1757 0.54 +0.7
1,838,463 + b1757 b1757 0.74 +0.7
1,838,563 + b1757 b1757 0.82 +0.2
1,838,833 + +0.1
1,838,833 + -0.3
1,839,201 + b1758 b1758 0.63 -0.5
1,839,552 - +1.3
1,839,552 - +1.0
1,839,760 - nudG b1759 0.60 -1.6

Or see this region's nucleotide sequence