Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4992

Experiment: KB with Harmol Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4990 and Psyr_4991 are separated by 7 nucleotidesPsyr_4991 and Psyr_4992 are separated by 439 nucleotidesPsyr_4992 and Psyr_4993 are separated by 9 nucleotides Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003 _4990 Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331 _4991 Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126 _4992 Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936 _4993 Position (kb) 5921 5922 5923 5924Strain fitness (log2 ratio) -3 -2 -1 0 1at 5920.802 kb on - strandat 5920.802 kb on - strandat 5920.804 kb on + strandat 5920.805 kb on - strandat 5920.805 kb on - strandat 5920.805 kb on - strandat 5920.844 kb on + strandat 5920.845 kb on - strandat 5920.874 kb on + strandat 5920.875 kb on - strandat 5920.875 kb on - strandat 5920.895 kb on + strandat 5920.896 kb on - strandat 5920.922 kb on + strandat 5920.922 kb on + strandat 5920.923 kb on - strandat 5920.923 kb on - strandat 5920.940 kb on - strandat 5921.048 kb on + strand, within Psyr_4991at 5921.127 kb on + strand, within Psyr_4991at 5921.159 kb on - strand, within Psyr_4991at 5921.212 kb on - strand, within Psyr_4991at 5921.226 kb on - strand, within Psyr_4991at 5921.377 kb on + strandat 5921.391 kb on + strandat 5921.464 kb on - strandat 5921.472 kb on + strandat 5921.472 kb on + strandat 5921.473 kb on - strandat 5921.478 kb on + strandat 5921.479 kb on - strandat 5921.479 kb on - strandat 5921.504 kb on + strandat 5921.504 kb on + strandat 5921.505 kb on - strandat 5921.578 kb on + strandat 5921.578 kb on + strandat 5921.667 kb on + strandat 5921.667 kb on + strandat 5921.668 kb on - strandat 5921.668 kb on - strandat 5921.668 kb on - strandat 5921.743 kb on + strandat 5921.743 kb on + strandat 5921.744 kb on - strandat 5921.744 kb on - strandat 5921.744 kb on - strandat 5921.799 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.401 kb on + strand, within Psyr_4992at 5922.594 kb on - strand, within Psyr_4992at 5922.594 kb on - strand, within Psyr_4992at 5922.660 kb on + strand, within Psyr_4992at 5922.719 kb on + strand, within Psyr_4992at 5922.746 kb on + strand, within Psyr_4992at 5922.811 kb on + strand, within Psyr_4992at 5922.850 kb on + strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.853 kb on + strand, within Psyr_4992at 5922.880 kb on + strand, within Psyr_4992at 5922.881 kb on - strand, within Psyr_4992at 5922.928 kb on + strand, within Psyr_4992at 5922.928 kb on + strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.934 kb on - strand, within Psyr_4992at 5923.037 kb on + strandat 5923.108 kb on + strandat 5923.232 kb on - strand, within Psyr_4993at 5923.238 kb on - strand, within Psyr_4993at 5923.238 kb on - strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.240 kb on - strand, within Psyr_4993at 5923.240 kb on - strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.327 kb on - strand, within Psyr_4993at 5923.336 kb on + strand, within Psyr_4993at 5923.337 kb on - strand, within Psyr_4993at 5923.396 kb on + strand, within Psyr_4993at 5923.396 kb on + strand, within Psyr_4993at 5923.508 kb on + strand, within Psyr_4993at 5923.550 kb on + strand, within Psyr_4993at 5923.550 kb on + strand, within Psyr_4993at 5923.551 kb on - strand, within Psyr_4993at 5923.655 kb on - strand, within Psyr_4993at 5923.748 kb on - strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.804 kb on - strand, within Psyr_4993at 5923.816 kb on + strand, within Psyr_4993at 5923.871 kb on + strandat 5923.872 kb on - strandat 5923.991 kb on + strandat 5924.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol Hydrochloride 10 mM
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5,920,802 - +0.3
5,920,802 - +0.3
5,920,804 + -0.9
5,920,805 - +0.4
5,920,805 - +0.9
5,920,805 - -0.6
5,920,844 + +0.6
5,920,845 - -1.1
5,920,874 + +0.7
5,920,875 - -1.1
5,920,875 - +0.5
5,920,895 + +0.3
5,920,896 - +0.1
5,920,922 + -0.1
5,920,922 + +1.2
5,920,923 - +1.0
5,920,923 - -0.3
5,920,940 - -0.8
5,921,048 + Psyr_4991 0.12 -2.5
5,921,127 + Psyr_4991 0.36 -1.9
5,921,159 - Psyr_4991 0.46 -2.8
5,921,212 - Psyr_4991 0.63 -1.4
5,921,226 - Psyr_4991 0.67 -0.1
5,921,377 + +0.1
5,921,391 + -0.4
5,921,464 - -0.4
5,921,472 + -0.8
5,921,472 + -0.9
5,921,473 - +0.5
5,921,478 + -0.6
5,921,479 - -0.4
5,921,479 - -0.9
5,921,504 + -0.4
5,921,504 + -1.1
5,921,505 - +0.4
5,921,578 + -0.7
5,921,578 + -0.2
5,921,667 + +0.3
5,921,667 + -0.9
5,921,668 - -2.2
5,921,668 - -0.3
5,921,668 - -0.2
5,921,743 + -0.3
5,921,743 + -1.2
5,921,744 - +0.7
5,921,744 - +0.5
5,921,744 - +0.7
5,921,799 - -0.4
5,921,814 - -0.4
5,921,814 - +0.5
5,921,814 - -0.6
5,921,814 - -1.3
5,922,329 - Psyr_4992 0.41 +0.7
5,922,329 - Psyr_4992 0.41 -0.2
5,922,329 - Psyr_4992 0.41 -0.4
5,922,329 - Psyr_4992 0.41 +0.5
5,922,333 - Psyr_4992 0.41 +0.2
5,922,333 - Psyr_4992 0.41 -0.0
5,922,333 - Psyr_4992 0.41 +1.7
5,922,333 - Psyr_4992 0.41 -0.6
5,922,401 + Psyr_4992 0.46 -1.4
5,922,594 - Psyr_4992 0.61 -0.2
5,922,594 - Psyr_4992 0.61 +0.5
5,922,660 + Psyr_4992 0.66 -0.3
5,922,719 + Psyr_4992 0.70 +0.5
5,922,746 + Psyr_4992 0.72 +1.2
5,922,811 + Psyr_4992 0.77 -1.0
5,922,850 + Psyr_4992 0.80 -0.1
5,922,851 - Psyr_4992 0.80 -0.0
5,922,851 - Psyr_4992 0.80 -0.6
5,922,851 - Psyr_4992 0.80 -0.5
5,922,853 + Psyr_4992 0.80 -1.2
5,922,880 + Psyr_4992 0.82 -0.4
5,922,881 - Psyr_4992 0.82 -0.8
5,922,928 + Psyr_4992 0.85 -0.8
5,922,928 + Psyr_4992 0.85 -0.7
5,922,929 - Psyr_4992 0.85 -1.0
5,922,929 - Psyr_4992 0.85 -0.6
5,922,929 - Psyr_4992 0.85 -2.1
5,922,929 - Psyr_4992 0.85 -0.1
5,922,934 - Psyr_4992 0.86 +0.2
5,923,037 + +1.5
5,923,108 + -1.1
5,923,232 - Psyr_4993 0.12 -2.2
5,923,238 - Psyr_4993 0.13 -0.7
5,923,238 - Psyr_4993 0.13 -0.9
5,923,239 + Psyr_4993 0.13 +0.2
5,923,239 + Psyr_4993 0.13 -0.1
5,923,239 + Psyr_4993 0.13 -0.4
5,923,239 + Psyr_4993 0.13 -0.4
5,923,239 + Psyr_4993 0.13 -0.5
5,923,239 + Psyr_4993 0.13 -0.5
5,923,239 + Psyr_4993 0.13 -2.4
5,923,240 - Psyr_4993 0.13 +0.1
5,923,240 - Psyr_4993 0.13 -1.2
5,923,326 + Psyr_4993 0.24 -0.4
5,923,327 - Psyr_4993 0.24 +1.2
5,923,336 + Psyr_4993 0.25 -0.6
5,923,337 - Psyr_4993 0.25 -0.9
5,923,396 + Psyr_4993 0.32 +0.7
5,923,396 + Psyr_4993 0.32 +0.0
5,923,508 + Psyr_4993 0.46 -0.3
5,923,550 + Psyr_4993 0.52 +0.0
5,923,550 + Psyr_4993 0.52 -1.5
5,923,551 - Psyr_4993 0.52 -0.6
5,923,655 - Psyr_4993 0.65 -0.1
5,923,748 - Psyr_4993 0.76 -0.5
5,923,749 + Psyr_4993 0.77 -0.4
5,923,749 + Psyr_4993 0.77 -0.5
5,923,749 + Psyr_4993 0.77 +0.9
5,923,749 + Psyr_4993 0.77 +0.2
5,923,749 + Psyr_4993 0.77 +0.1
5,923,749 + Psyr_4993 0.77 -0.2
5,923,749 + Psyr_4993 0.77 +0.1
5,923,750 - Psyr_4993 0.77 -0.2
5,923,750 - Psyr_4993 0.77 -0.9
5,923,750 - Psyr_4993 0.77 +0.0
5,923,750 - Psyr_4993 0.77 +0.0
5,923,750 - Psyr_4993 0.77 -0.6
5,923,750 - Psyr_4993 0.77 -0.8
5,923,750 - Psyr_4993 0.77 -1.1
5,923,750 - Psyr_4993 0.77 +0.7
5,923,804 - Psyr_4993 0.83 -2.1
5,923,816 + Psyr_4993 0.85 -0.3
5,923,871 + -0.3
5,923,872 - -1.3
5,923,991 + +0.7
5,924,007 + +0.1

Or see this region's nucleotide sequence