Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3541

Experiment: KB with Harmol Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3540 and Psyr_3541 are separated by 64 nucleotidesPsyr_3541 and Psyr_3542 are separated by 80 nucleotides Psyr_3540: Psyr_3540 - Zinc-containing alcohol dehydrogenase superfamily, at 4,217,886 to 4,218,887 _3540 Psyr_3541: Psyr_3541 - Short-chain dehydrogenase/reductase SDR, at 4,218,952 to 4,219,764 _3541 Psyr_3542: Psyr_3542 - Short-chain dehydrogenase/reductase SDR, at 4,219,845 to 4,220,594 _3542 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -2 -1 0 1at 4218.027 kb on - strand, within Psyr_3540at 4218.061 kb on + strand, within Psyr_3540at 4218.276 kb on - strand, within Psyr_3540at 4218.276 kb on - strand, within Psyr_3540at 4218.276 kb on - strand, within Psyr_3540at 4218.583 kb on + strand, within Psyr_3540at 4218.584 kb on - strand, within Psyr_3540at 4218.653 kb on - strand, within Psyr_3540at 4218.782 kb on - strand, within Psyr_3540at 4218.885 kb on + strandat 4218.885 kb on + strandat 4218.885 kb on + strandat 4218.886 kb on - strandat 4218.894 kb on - strandat 4218.897 kb on - strandat 4219.043 kb on - strand, within Psyr_3541at 4219.384 kb on + strand, within Psyr_3541at 4219.384 kb on + strand, within Psyr_3541at 4219.414 kb on + strand, within Psyr_3541at 4219.415 kb on - strand, within Psyr_3541at 4219.484 kb on + strand, within Psyr_3541at 4219.484 kb on + strand, within Psyr_3541at 4219.484 kb on + strand, within Psyr_3541at 4219.484 kb on + strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.538 kb on - strand, within Psyr_3541at 4219.697 kb on + strandat 4219.762 kb on + strandat 4219.762 kb on + strandat 4219.762 kb on + strandat 4219.763 kb on - strandat 4219.789 kb on + strandat 4219.790 kb on - strandat 4219.944 kb on - strand, within Psyr_3542at 4219.998 kb on + strand, within Psyr_3542at 4219.998 kb on + strand, within Psyr_3542at 4219.998 kb on + strand, within Psyr_3542at 4219.999 kb on - strand, within Psyr_3542at 4219.999 kb on - strand, within Psyr_3542at 4220.112 kb on - strand, within Psyr_3542at 4220.183 kb on + strand, within Psyr_3542at 4220.184 kb on - strand, within Psyr_3542at 4220.184 kb on - strand, within Psyr_3542at 4220.353 kb on + strand, within Psyr_3542at 4220.383 kb on - strand, within Psyr_3542at 4220.488 kb on + strand, within Psyr_3542at 4220.489 kb on - strand, within Psyr_3542at 4220.544 kb on + strandat 4220.544 kb on + strandat 4220.544 kb on + strandat 4220.544 kb on + strandat 4220.545 kb on - strandat 4220.545 kb on - strandat 4220.545 kb on - strandat 4220.545 kb on - strandat 4220.574 kb on + strandat 4220.621 kb on + strandat 4220.622 kb on - strandat 4220.622 kb on - strandat 4220.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol Hydrochloride 10 mM
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4,218,027 - Psyr_3540 0.14 +0.6
4,218,061 + Psyr_3540 0.17 +0.9
4,218,276 - Psyr_3540 0.39 -0.2
4,218,276 - Psyr_3540 0.39 +1.2
4,218,276 - Psyr_3540 0.39 +0.2
4,218,583 + Psyr_3540 0.70 +1.0
4,218,584 - Psyr_3540 0.70 +1.0
4,218,653 - Psyr_3540 0.77 +0.6
4,218,782 - Psyr_3540 0.89 +0.4
4,218,885 + +1.0
4,218,885 + +0.7
4,218,885 + -0.3
4,218,886 - +0.0
4,218,894 - -0.7
4,218,897 - +0.4
4,219,043 - Psyr_3541 0.11 +0.6
4,219,384 + Psyr_3541 0.53 +0.4
4,219,384 + Psyr_3541 0.53 +0.9
4,219,414 + Psyr_3541 0.57 +1.0
4,219,415 - Psyr_3541 0.57 -0.1
4,219,484 + Psyr_3541 0.65 -2.0
4,219,484 + Psyr_3541 0.65 +0.4
4,219,484 + Psyr_3541 0.65 +0.6
4,219,484 + Psyr_3541 0.65 +0.4
4,219,485 - Psyr_3541 0.66 +0.2
4,219,485 - Psyr_3541 0.66 +0.8
4,219,485 - Psyr_3541 0.66 +0.5
4,219,485 - Psyr_3541 0.66 +0.2
4,219,538 - Psyr_3541 0.72 -0.0
4,219,697 + -1.3
4,219,762 + -0.5
4,219,762 + -0.1
4,219,762 + -0.8
4,219,763 - +1.3
4,219,789 + -0.4
4,219,790 - +1.0
4,219,944 - Psyr_3542 0.13 +0.2
4,219,998 + Psyr_3542 0.20 -1.3
4,219,998 + Psyr_3542 0.20 +0.3
4,219,998 + Psyr_3542 0.20 +0.0
4,219,999 - Psyr_3542 0.21 -1.2
4,219,999 - Psyr_3542 0.21 -0.1
4,220,112 - Psyr_3542 0.36 -1.7
4,220,183 + Psyr_3542 0.45 +0.2
4,220,184 - Psyr_3542 0.45 +1.5
4,220,184 - Psyr_3542 0.45 -0.7
4,220,353 + Psyr_3542 0.68 -2.3
4,220,383 - Psyr_3542 0.72 +1.0
4,220,488 + Psyr_3542 0.86 -0.2
4,220,489 - Psyr_3542 0.86 +0.9
4,220,544 + -0.6
4,220,544 + +0.4
4,220,544 + -1.6
4,220,544 + -0.4
4,220,545 - -0.8
4,220,545 - +1.2
4,220,545 - -0.6
4,220,545 - +0.2
4,220,574 + -1.8
4,220,621 + -0.1
4,220,622 - +0.1
4,220,622 - +1.0
4,220,622 - +0.9

Or see this region's nucleotide sequence