Experiment: KB with Harmol Hydrochloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3476 and Psyr_3477 are separated by 475 nucleotides Psyr_3477 and Psyr_3478 are separated by 197 nucleotides
Psyr_3476: Psyr_3476 - Flagellar basal body rod protein:Protein of unknown function DUF1078, at 4,146,472 to 4,147,212
_3476
Psyr_3477: Psyr_3477 - Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE, at 4,147,688 to 4,149,436
_3477
Psyr_3478: Psyr_3478 - Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE, at 4,149,634 to 4,150,962
_3478
Position (kb) 4147
4148
4149
4150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4146.917 kb on + strand, within Psyr_3476 at 4146.918 kb on - strand, within Psyr_3476 at 4146.918 kb on - strand, within Psyr_3476 at 4147.197 kb on - strand at 4147.197 kb on - strand at 4147.197 kb on - strand at 4147.246 kb on + strand at 4147.246 kb on + strand at 4147.247 kb on - strand at 4147.247 kb on - strand at 4147.247 kb on - strand at 4147.583 kb on + strand at 4147.583 kb on + strand at 4147.583 kb on + strand at 4147.866 kb on + strand, within Psyr_3477 at 4147.866 kb on + strand, within Psyr_3477 at 4147.867 kb on - strand, within Psyr_3477 at 4147.867 kb on - strand, within Psyr_3477 at 4147.912 kb on + strand, within Psyr_3477 at 4148.061 kb on + strand, within Psyr_3477 at 4148.062 kb on - strand, within Psyr_3477 at 4148.391 kb on + strand, within Psyr_3477 at 4148.392 kb on - strand, within Psyr_3477 at 4148.392 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.615 kb on + strand, within Psyr_3477 at 4148.679 kb on + strand, within Psyr_3477 at 4148.680 kb on - strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.809 kb on - strand, within Psyr_3477 at 4148.809 kb on - strand, within Psyr_3477 at 4148.957 kb on - strand, within Psyr_3477 at 4149.134 kb on - strand, within Psyr_3477 at 4149.135 kb on + strand, within Psyr_3477 at 4149.135 kb on + strand, within Psyr_3477 at 4149.136 kb on - strand, within Psyr_3477 at 4149.184 kb on + strand, within Psyr_3477 at 4149.190 kb on + strand, within Psyr_3477 at 4149.260 kb on + strand, within Psyr_3477 at 4149.261 kb on - strand, within Psyr_3477 at 4149.309 kb on + strand at 4149.309 kb on + strand at 4149.309 kb on + strand at 4149.309 kb on + strand at 4149.309 kb on + strand at 4149.310 kb on - strand at 4149.310 kb on - strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.353 kb on - strand at 4149.367 kb on + strand at 4149.368 kb on - strand at 4149.371 kb on - strand at 4149.466 kb on + strand at 4149.467 kb on - strand at 4149.497 kb on + strand at 4149.512 kb on + strand at 4149.513 kb on - strand at 4149.557 kb on - strand at 4149.635 kb on + strand at 4149.635 kb on + strand at 4149.636 kb on - strand at 4149.636 kb on - strand at 4149.636 kb on - strand at 4149.648 kb on + strand at 4149.701 kb on + strand at 4149.702 kb on - strand at 4149.702 kb on - strand at 4149.782 kb on + strand, within Psyr_3478 at 4149.782 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.996 kb on - strand, within Psyr_3478 at 4150.044 kb on + strand, within Psyr_3478 at 4150.104 kb on + strand, within Psyr_3478 at 4150.104 kb on + strand, within Psyr_3478 at 4150.105 kb on - strand, within Psyr_3478 at 4150.162 kb on - strand, within Psyr_3478 at 4150.162 kb on - strand, within Psyr_3478 at 4150.197 kb on + strand, within Psyr_3478 at 4150.254 kb on + strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.327 kb on - strand, within Psyr_3478 at 4150.349 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.401 kb on - strand, within Psyr_3478 at 4150.401 kb on - strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.416 kb on + strand, within Psyr_3478
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol Hydrochloride 10 mM remove 4,146,917 + Psyr_3476 0.60 -2.1 4,146,918 - Psyr_3476 0.60 +0.8 4,146,918 - Psyr_3476 0.60 -0.1 4,147,197 - +0.3 4,147,197 - -0.4 4,147,197 - +1.0 4,147,246 + -1.0 4,147,246 + -1.6 4,147,247 - +0.4 4,147,247 - +0.2 4,147,247 - -1.0 4,147,583 + -0.2 4,147,583 + -0.8 4,147,583 + -2.9 4,147,866 + Psyr_3477 0.10 -0.3 4,147,866 + Psyr_3477 0.10 +0.6 4,147,867 - Psyr_3477 0.10 -2.0 4,147,867 - Psyr_3477 0.10 -0.1 4,147,912 + Psyr_3477 0.13 +0.2 4,148,061 + Psyr_3477 0.21 -1.0 4,148,062 - Psyr_3477 0.21 +0.2 4,148,391 + Psyr_3477 0.40 -0.9 4,148,392 - Psyr_3477 0.40 -0.4 4,148,392 - Psyr_3477 0.40 -0.0 4,148,455 - Psyr_3477 0.44 -1.0 4,148,455 - Psyr_3477 0.44 -0.3 4,148,455 - Psyr_3477 0.44 +1.1 4,148,455 - Psyr_3477 0.44 -1.3 4,148,455 - Psyr_3477 0.44 -0.8 4,148,615 + Psyr_3477 0.53 -0.1 4,148,679 + Psyr_3477 0.57 +0.1 4,148,680 - Psyr_3477 0.57 -1.1 4,148,772 + Psyr_3477 0.62 -0.6 4,148,772 + Psyr_3477 0.62 +0.5 4,148,772 + Psyr_3477 0.62 -0.6 4,148,772 + Psyr_3477 0.62 -0.4 4,148,772 + Psyr_3477 0.62 -0.2 4,148,772 + Psyr_3477 0.62 -0.6 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 +0.3 4,148,772 + Psyr_3477 0.62 -1.1 4,148,772 + Psyr_3477 0.62 +0.9 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 -0.4 4,148,772 + Psyr_3477 0.62 -0.1 4,148,772 + Psyr_3477 0.62 +0.9 4,148,772 + Psyr_3477 0.62 +0.4 4,148,772 + Psyr_3477 0.62 -1.6 4,148,772 + Psyr_3477 0.62 -0.4 4,148,772 + Psyr_3477 0.62 -0.0 4,148,772 + Psyr_3477 0.62 -1.5 4,148,772 + Psyr_3477 0.62 +1.0 4,148,772 + Psyr_3477 0.62 -1.6 4,148,773 - Psyr_3477 0.62 +2.6 4,148,773 - Psyr_3477 0.62 -0.2 4,148,773 - Psyr_3477 0.62 -0.4 4,148,773 - Psyr_3477 0.62 -0.7 4,148,773 - Psyr_3477 0.62 -1.0 4,148,773 - Psyr_3477 0.62 -1.0 4,148,773 - Psyr_3477 0.62 -1.0 4,148,773 - Psyr_3477 0.62 -1.0 4,148,773 - Psyr_3477 0.62 -0.7 4,148,773 - Psyr_3477 0.62 +0.0 4,148,773 - Psyr_3477 0.62 -0.7 4,148,773 - Psyr_3477 0.62 +0.6 4,148,773 - Psyr_3477 0.62 +1.0 4,148,773 - Psyr_3477 0.62 -0.9 4,148,773 - Psyr_3477 0.62 -0.7 4,148,773 - Psyr_3477 0.62 -0.0 4,148,773 - Psyr_3477 0.62 +1.2 4,148,773 - Psyr_3477 0.62 +0.3 4,148,773 - Psyr_3477 0.62 +0.4 4,148,773 - Psyr_3477 0.62 +0.0 4,148,808 + Psyr_3477 0.64 +0.3 4,148,808 + Psyr_3477 0.64 +0.2 4,148,809 - Psyr_3477 0.64 -1.0 4,148,809 - Psyr_3477 0.64 +0.3 4,148,957 - Psyr_3477 0.73 +1.4 4,149,134 - Psyr_3477 0.83 -2.0 4,149,135 + Psyr_3477 0.83 +0.4 4,149,135 + Psyr_3477 0.83 -0.8 4,149,136 - Psyr_3477 0.83 +0.4 4,149,184 + Psyr_3477 0.86 -1.6 4,149,190 + Psyr_3477 0.86 -1.2 4,149,260 + Psyr_3477 0.90 +0.3 4,149,261 - Psyr_3477 0.90 +0.3 4,149,309 + +0.4 4,149,309 + +0.0 4,149,309 + +0.9 4,149,309 + -0.3 4,149,309 + -1.2 4,149,310 - -1.2 4,149,310 - +1.3 4,149,311 + -1.9 4,149,311 + -0.8 4,149,311 + +0.8 4,149,311 + -0.7 4,149,311 + +0.6 4,149,311 + -0.9 4,149,311 + -0.6 4,149,311 + +0.3 4,149,312 - -0.1 4,149,312 - +0.4 4,149,312 - -1.1 4,149,312 - +0.0 4,149,312 - -0.3 4,149,312 - -1.0 4,149,353 - +0.0 4,149,367 + +1.0 4,149,368 - +0.2 4,149,371 - +0.2 4,149,466 + +0.0 4,149,467 - -0.5 4,149,497 + +0.8 4,149,512 + +1.3 4,149,513 - +0.8 4,149,557 - -1.0 4,149,635 + +0.1 4,149,635 + +0.0 4,149,636 - -0.9 4,149,636 - +0.3 4,149,636 - +1.0 4,149,648 + -0.7 4,149,701 + -0.3 4,149,702 - +1.1 4,149,702 - +0.7 4,149,782 + Psyr_3478 0.11 +3.6 4,149,782 + Psyr_3478 0.11 -2.3 4,149,935 + Psyr_3478 0.23 -0.8 4,149,935 + Psyr_3478 0.23 +0.5 4,149,935 + Psyr_3478 0.23 -1.2 4,149,935 + Psyr_3478 0.23 -2.4 4,149,935 + Psyr_3478 0.23 +0.4 4,149,936 - Psyr_3478 0.23 +0.4 4,149,936 - Psyr_3478 0.23 -0.3 4,149,936 - Psyr_3478 0.23 +0.8 4,149,936 - Psyr_3478 0.23 -0.1 4,149,936 - Psyr_3478 0.23 -0.6 4,149,996 - Psyr_3478 0.27 +0.3 4,150,044 + Psyr_3478 0.31 +0.6 4,150,104 + Psyr_3478 0.35 +1.3 4,150,104 + Psyr_3478 0.35 +1.4 4,150,105 - Psyr_3478 0.35 +1.4 4,150,162 - Psyr_3478 0.40 +2.4 4,150,162 - Psyr_3478 0.40 +1.7 4,150,197 + Psyr_3478 0.42 -0.1 4,150,254 + Psyr_3478 0.47 -0.4 4,150,313 + Psyr_3478 0.51 -0.3 4,150,313 + Psyr_3478 0.51 -1.1 4,150,314 - Psyr_3478 0.51 +0.0 4,150,314 - Psyr_3478 0.51 +0.2 4,150,327 - Psyr_3478 0.52 +3.0 4,150,349 + Psyr_3478 0.54 +1.2 4,150,400 + Psyr_3478 0.58 -0.7 4,150,400 + Psyr_3478 0.58 +0.4 4,150,400 + Psyr_3478 0.58 -0.2 4,150,400 + Psyr_3478 0.58 +0.6 4,150,400 + Psyr_3478 0.58 +0.5 4,150,401 - Psyr_3478 0.58 -0.3 4,150,401 - Psyr_3478 0.58 -1.8 4,150,412 + Psyr_3478 0.59 -0.6 4,150,412 + Psyr_3478 0.59 +0.6 4,150,412 + Psyr_3478 0.59 +0.4 4,150,412 + Psyr_3478 0.59 +0.7 4,150,412 + Psyr_3478 0.59 +0.2 4,150,412 + Psyr_3478 0.59 +0.8 4,150,412 + Psyr_3478 0.59 +2.8 4,150,412 + Psyr_3478 0.59 +0.9 4,150,412 + Psyr_3478 0.59 +0.7 4,150,412 + Psyr_3478 0.59 +1.8 4,150,413 - Psyr_3478 0.59 -0.3 4,150,413 - Psyr_3478 0.59 -0.3 4,150,413 - Psyr_3478 0.59 +0.3 4,150,413 - Psyr_3478 0.59 +1.3 4,150,413 - Psyr_3478 0.59 +0.1 4,150,413 - Psyr_3478 0.59 +1.3 4,150,416 + Psyr_3478 0.59 +0.5
Or see this region's nucleotide sequence