Experiment: KB with Harmol Hydrochloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2527 and Psyr_2528 overlap by 4 nucleotides Psyr_2528 and Psyr_2529 are separated by 20 nucleotides
Psyr_2527: Psyr_2527 - GCN5-related N-acetyltransferase, at 2,938,278 to 2,939,426
_2527
Psyr_2528: Psyr_2528 - Polysaccharide deacetylase, at 2,939,423 to 2,940,325
_2528
Psyr_2529: Psyr_2529 - Amidohydrolase, at 2,940,346 to 2,941,605
_2529
Position (kb)
2939
2940
2941 Strain fitness (log2 ratio)
-1
0
1
2 at 2938.491 kb on + strand, within Psyr_2527 at 2938.677 kb on + strand, within Psyr_2527 at 2938.678 kb on - strand, within Psyr_2527 at 2938.678 kb on - strand, within Psyr_2527 at 2938.678 kb on - strand, within Psyr_2527 at 2938.678 kb on - strand, within Psyr_2527 at 2938.681 kb on - strand, within Psyr_2527 at 2938.758 kb on + strand, within Psyr_2527 at 2938.758 kb on + strand, within Psyr_2527 at 2938.758 kb on + strand, within Psyr_2527 at 2939.245 kb on + strand, within Psyr_2527 at 2939.428 kb on + strand at 2939.429 kb on - strand at 2939.594 kb on + strand, within Psyr_2528 at 2939.594 kb on + strand, within Psyr_2528 at 2939.987 kb on + strand, within Psyr_2528 at 2939.990 kb on - strand, within Psyr_2528 at 2939.990 kb on - strand, within Psyr_2528 at 2940.016 kb on + strand, within Psyr_2528 at 2940.147 kb on - strand, within Psyr_2528 at 2940.157 kb on - strand, within Psyr_2528 at 2940.210 kb on - strand, within Psyr_2528 at 2940.210 kb on - strand, within Psyr_2528 at 2940.210 kb on - strand, within Psyr_2528 at 2940.596 kb on + strand, within Psyr_2529 at 2940.908 kb on + strand, within Psyr_2529 at 2940.908 kb on + strand, within Psyr_2529 at 2940.908 kb on + strand, within Psyr_2529 at 2940.909 kb on - strand, within Psyr_2529 at 2940.909 kb on - strand, within Psyr_2529 at 2940.909 kb on - strand, within Psyr_2529
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol Hydrochloride 10 mM remove 2,938,491 + Psyr_2527 0.19 -0.1 2,938,677 + Psyr_2527 0.35 -0.1 2,938,678 - Psyr_2527 0.35 -0.5 2,938,678 - Psyr_2527 0.35 +0.1 2,938,678 - Psyr_2527 0.35 +0.1 2,938,678 - Psyr_2527 0.35 +0.1 2,938,681 - Psyr_2527 0.35 +0.8 2,938,758 + Psyr_2527 0.42 -0.9 2,938,758 + Psyr_2527 0.42 +0.4 2,938,758 + Psyr_2527 0.42 -0.4 2,939,245 + Psyr_2527 0.84 +0.9 2,939,428 + +1.4 2,939,429 - -0.5 2,939,594 + Psyr_2528 0.19 +0.8 2,939,594 + Psyr_2528 0.19 -0.6 2,939,987 + Psyr_2528 0.62 +0.8 2,939,990 - Psyr_2528 0.63 +0.0 2,939,990 - Psyr_2528 0.63 -0.4 2,940,016 + Psyr_2528 0.66 -0.0 2,940,147 - Psyr_2528 0.80 +0.7 2,940,157 - Psyr_2528 0.81 +0.4 2,940,210 - Psyr_2528 0.87 +1.4 2,940,210 - Psyr_2528 0.87 -1.2 2,940,210 - Psyr_2528 0.87 +0.8 2,940,596 + Psyr_2529 0.20 +2.2 2,940,908 + Psyr_2529 0.45 -1.6 2,940,908 + Psyr_2529 0.45 -0.3 2,940,908 + Psyr_2529 0.45 -0.5 2,940,909 - Psyr_2529 0.45 +1.0 2,940,909 - Psyr_2529 0.45 +0.5 2,940,909 - Psyr_2529 0.45 -1.0
Or see this region's nucleotide sequence