Strain Fitness in Escherichia coli BW25113 around b0875

Experiment: LB Anaerobic with Zinc Pyrithione 0.00000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjE and aqpZ are separated by 494 nucleotidesaqpZ and ybjD are separated by 425 nucleotides b0874: ybjE - putative surface protein (VIMSS), at 913,181 to 914,080 ybjE b0875: aqpZ - aquaporin Z (NCBI), at 914,575 to 915,270 aqpZ b0876: ybjD - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 915,696 to 917,354 ybjD Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1at 913.577 kb on - strand, within ybjEat 913.577 kb on - strand, within ybjEat 913.597 kb on - strand, within ybjEat 913.597 kb on - strand, within ybjEat 913.611 kb on - strand, within ybjEat 913.611 kb on - strand, within ybjEat 913.708 kb on + strand, within ybjEat 913.729 kb on - strand, within ybjEat 913.733 kb on + strand, within ybjEat 913.733 kb on + strand, within ybjEat 913.750 kb on + strand, within ybjEat 913.812 kb on + strand, within ybjEat 913.824 kb on + strand, within ybjEat 913.824 kb on + strand, within ybjEat 913.830 kb on - strand, within ybjEat 913.897 kb on - strand, within ybjEat 913.914 kb on + strand, within ybjEat 913.922 kb on + strand, within ybjEat 913.924 kb on - strand, within ybjEat 913.934 kb on + strand, within ybjEat 913.934 kb on + strand, within ybjEat 913.939 kb on + strand, within ybjEat 914.030 kb on + strandat 914.035 kb on + strandat 914.060 kb on + strandat 914.068 kb on - strandat 914.093 kb on - strandat 914.093 kb on - strandat 914.128 kb on - strandat 914.128 kb on - strandat 914.131 kb on - strandat 914.190 kb on + strandat 914.303 kb on - strandat 914.562 kb on - strandat 914.642 kb on + strandat 914.650 kb on - strand, within aqpZat 914.702 kb on - strand, within aqpZat 914.720 kb on - strand, within aqpZat 914.757 kb on + strand, within aqpZat 914.764 kb on + strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.784 kb on + strand, within aqpZat 914.911 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 915.193 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.226 kb on - strandat 915.226 kb on - strandat 915.279 kb on + strandat 915.279 kb on + strandat 915.437 kb on - strandat 915.461 kb on - strandat 915.461 kb on - strandat 915.473 kb on - strandat 915.570 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.647 kb on + strandat 915.647 kb on - strandat 915.700 kb on + strandat 915.705 kb on - strandat 915.710 kb on + strandat 915.783 kb on - strandat 915.794 kb on + strandat 915.817 kb on + strandat 915.817 kb on + strandat 915.841 kb on + strandat 915.909 kb on + strand, within ybjDat 915.970 kb on - strand, within ybjDat 916.056 kb on - strand, within ybjDat 916.212 kb on + strand, within ybjD

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Zinc Pyrithione 0.00000125 mM
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913,577 - ybjE b0874 0.44 -0.2
913,577 - ybjE b0874 0.44 -0.7
913,597 - ybjE b0874 0.46 -1.7
913,597 - ybjE b0874 0.46 -1.5
913,611 - ybjE b0874 0.48 -1.6
913,611 - ybjE b0874 0.48 +1.0
913,708 + ybjE b0874 0.59 +0.3
913,729 - ybjE b0874 0.61 +1.2
913,733 + ybjE b0874 0.61 -0.9
913,733 + ybjE b0874 0.61 +1.2
913,750 + ybjE b0874 0.63 +0.3
913,812 + ybjE b0874 0.70 -0.4
913,824 + ybjE b0874 0.71 -0.2
913,824 + ybjE b0874 0.71 -0.1
913,830 - ybjE b0874 0.72 +0.7
913,897 - ybjE b0874 0.80 +0.1
913,914 + ybjE b0874 0.81 +0.0
913,922 + ybjE b0874 0.82 +0.6
913,924 - ybjE b0874 0.83 -0.0
913,934 + ybjE b0874 0.84 -0.2
913,934 + ybjE b0874 0.84 -0.5
913,939 + ybjE b0874 0.84 +0.1
914,030 + -0.6
914,035 + +0.5
914,060 + -0.2
914,068 - +0.9
914,093 - +1.3
914,093 - -1.5
914,128 - +0.3
914,128 - -0.2
914,131 - +1.0
914,190 + -0.2
914,303 - -0.2
914,562 - +0.5
914,642 + +1.2
914,650 - aqpZ b0875 0.11 -0.0
914,702 - aqpZ b0875 0.18 +0.4
914,720 - aqpZ b0875 0.21 +0.5
914,757 + aqpZ b0875 0.26 -0.5
914,764 + aqpZ b0875 0.27 +0.3
914,767 - aqpZ b0875 0.28 -0.9
914,767 - aqpZ b0875 0.28 +0.4
914,784 + aqpZ b0875 0.30 -1.3
914,911 + aqpZ b0875 0.48 +0.6
914,941 + aqpZ b0875 0.53 +1.3
914,941 + aqpZ b0875 0.53 -0.7
914,998 + aqpZ b0875 0.61 +0.3
914,998 + aqpZ b0875 0.61 -2.0
915,193 + aqpZ b0875 0.89 -0.1
915,198 + aqpZ b0875 0.90 -1.3
915,198 + aqpZ b0875 0.90 -0.4
915,198 + aqpZ b0875 0.90 -0.4
915,203 + -0.3
915,203 + +0.6
915,203 + -0.3
915,203 + -1.5
915,206 - +0.2
915,206 - -0.5
915,206 - +0.3
915,206 - +1.1
915,206 - +0.1
915,226 - +0.7
915,226 - +1.0
915,279 + -0.5
915,279 + +0.1
915,437 - -0.4
915,461 - -0.4
915,461 - +1.5
915,473 - -1.0
915,570 - +1.6
915,616 - +0.3
915,616 - +1.6
915,616 - -1.7
915,616 - +0.0
915,647 + -0.2
915,647 - -0.7
915,700 + -0.5
915,705 - -0.1
915,710 + -0.0
915,783 - -0.7
915,794 + -0.0
915,817 + +0.2
915,817 + -0.0
915,841 + +0.5
915,909 + ybjD b0876 0.13 +0.3
915,970 - ybjD b0876 0.17 -0.8
916,056 - ybjD b0876 0.22 -0.8
916,212 + ybjD b0876 0.31 -0.7

Or see this region's nucleotide sequence