Experiment: LB Anaerobic with Zinc Pyrithione 0.0000025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfeC and yfeD are separated by 1 nucleotides yfeD and gltX are separated by 51 nucleotides gltX and valU are separated by 258 nucleotides valU and valX are separated by 44 nucleotides valX and valY are separated by 46 nucleotides valY and lysV are separated by 4 nucleotides lysV and xapR are separated by 264 nucleotides
b2398: yfeC - orf, hypothetical protein (VIMSS), at 2,516,489 to 2,516,833
yfeC
b2399: yfeD - predicted DNA-binding transcriptional regulator (RefSeq), at 2,516,835 to 2,517,227
yfeD
b2400: gltX - glutamyl-tRNA synthetase (NCBI), at 2,517,279 to 2,518,694
gltX
b2401: valU - tRNA-Val (NCBI), at 2,518,953 to 2,519,028
valU
b2402: valX - tRNA-Val (NCBI), at 2,519,073 to 2,519,148
valX
b2403: valY - tRNA-Val (NCBI), at 2,519,195 to 2,519,270
valY
b2404: lysV - tRNA-Lys (NCBI), at 2,519,275 to 2,519,350
lysV
b2405: xapR - DNA-binding transcriptional activator (NCBI), at 2,519,615 to 2,520,499
xapR
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2516.434 kb on - strand at 2516.439 kb on + strand at 2516.439 kb on + strand at 2516.560 kb on - strand, within yfeC at 2516.560 kb on - strand, within yfeC at 2516.568 kb on - strand, within yfeC at 2516.620 kb on - strand, within yfeC at 2516.787 kb on + strand, within yfeC at 2516.808 kb on + strand at 2516.808 kb on + strand at 2516.873 kb on + strand at 2516.873 kb on + strand at 2516.890 kb on - strand, within yfeD at 2516.890 kb on - strand, within yfeD at 2516.963 kb on - strand, within yfeD at 2516.976 kb on - strand, within yfeD at 2517.017 kb on - strand, within yfeD at 2517.027 kb on + strand, within yfeD at 2517.035 kb on - strand, within yfeD at 2517.035 kb on - strand, within yfeD at 2517.035 kb on - strand, within yfeD at 2517.037 kb on - strand, within yfeD at 2517.044 kb on + strand, within yfeD at 2517.044 kb on + strand, within yfeD at 2517.047 kb on + strand, within yfeD at 2517.047 kb on + strand, within yfeD at 2517.203 kb on + strand at 2517.213 kb on + strand at 2517.213 kb on + strand at 2517.281 kb on - strand at 2518.799 kb on + strand at 2518.935 kb on - strand at 2518.935 kb on - strand at 2518.939 kb on + strand at 2519.620 kb on - strand at 2519.657 kb on + strand at 2519.665 kb on - strand at 2519.679 kb on + strand at 2519.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Zinc Pyrithione 0.0000025 mM remove 2,516,434 - +0.1 2,516,439 + -1.2 2,516,439 + +0.3 2,516,560 - yfeC b2398 0.21 -0.9 2,516,560 - yfeC b2398 0.21 -1.9 2,516,568 - yfeC b2398 0.23 -1.1 2,516,620 - yfeC b2398 0.38 -1.9 2,516,787 + yfeC b2398 0.86 -0.6 2,516,808 + +1.1 2,516,808 + -0.2 2,516,873 + +0.3 2,516,873 + +0.3 2,516,890 - yfeD b2399 0.14 -0.4 2,516,890 - yfeD b2399 0.14 +1.6 2,516,963 - yfeD b2399 0.33 +0.6 2,516,976 - yfeD b2399 0.36 +0.6 2,517,017 - yfeD b2399 0.46 -2.2 2,517,027 + yfeD b2399 0.49 -1.7 2,517,035 - yfeD b2399 0.51 +0.2 2,517,035 - yfeD b2399 0.51 -0.9 2,517,035 - yfeD b2399 0.51 -2.0 2,517,037 - yfeD b2399 0.51 -1.0 2,517,044 + yfeD b2399 0.53 +0.7 2,517,044 + yfeD b2399 0.53 -0.1 2,517,047 + yfeD b2399 0.54 +0.2 2,517,047 + yfeD b2399 0.54 -0.8 2,517,203 + -0.5 2,517,213 + -1.0 2,517,213 + -1.7 2,517,281 - -0.3 2,518,799 + -1.4 2,518,935 - +1.6 2,518,935 - +2.1 2,518,939 + +0.6 2,519,620 - -0.1 2,519,657 + +0.6 2,519,665 - -0.2 2,519,679 + +0.0 2,519,687 - +1.9
Or see this region's nucleotide sequence