Strain Fitness in Escherichia coli BW25113 around b1922

Experiment: LB Anaerobic with Zinc Pyrithione 0.0000025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfliY and fliZ are separated by 87 nucleotidesfliZ and fliA are separated by 45 nucleotidesfliA and fliC are separated by 320 nucleotides b1920: fliY - cystine transporter subunit (NCBI), at 1,997,609 to 1,998,409 fliY b1921: fliZ - orf, hypothetical protein (VIMSS), at 1,998,497 to 1,999,048 fliZ b1922: fliA - flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS), at 1,999,094 to 1,999,813 fliA b1923: fliC - flagellin (NCBI), at 2,000,134 to 2,001,630 fliC Position (kb) 1999 2000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1998.266 kb on + strand, within fliYat 1998.375 kb on + strandat 1998.375 kb on + strandat 1998.387 kb on - strandat 1998.549 kb on - strandat 1998.568 kb on + strand, within fliZat 1998.568 kb on - strand, within fliZat 1998.616 kb on - strand, within fliZat 1998.981 kb on + strand, within fliZat 1998.981 kb on + strand, within fliZat 1999.139 kb on + strandat 1999.145 kb on - strandat 1999.145 kb on - strandat 1999.177 kb on - strand, within fliAat 1999.209 kb on - strand, within fliAat 1999.292 kb on - strand, within fliAat 1999.292 kb on - strand, within fliAat 1999.302 kb on - strand, within fliAat 1999.504 kb on - strand, within fliAat 1999.504 kb on - strand, within fliAat 1999.508 kb on - strand, within fliAat 1999.509 kb on - strand, within fliAat 1999.509 kb on - strand, within fliAat 1999.541 kb on + strand, within fliAat 1999.595 kb on - strand, within fliAat 1999.600 kb on - strand, within fliAat 1999.615 kb on + strand, within fliAat 1999.655 kb on + strand, within fliAat 1999.800 kb on - strandat 1999.832 kb on + strandat 1999.903 kb on - strandat 1999.969 kb on + strandat 1999.969 kb on + strandat 2000.236 kb on - strandat 2000.439 kb on - strand, within fliCat 2000.523 kb on + strand, within fliCat 2000.591 kb on + strand, within fliCat 2000.591 kb on + strand, within fliCat 2000.766 kb on - strand, within fliCat 2000.772 kb on + strand, within fliCat 2000.772 kb on + strand, within fliC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Zinc Pyrithione 0.0000025 mM
remove
1,998,266 + fliY b1920 0.82 -0.1
1,998,375 + -0.5
1,998,375 + -0.5
1,998,387 - -0.1
1,998,549 - -0.3
1,998,568 + fliZ b1921 0.13 -1.1
1,998,568 - fliZ b1921 0.13 -0.3
1,998,616 - fliZ b1921 0.22 -0.5
1,998,981 + fliZ b1921 0.88 -2.3
1,998,981 + fliZ b1921 0.88 -0.4
1,999,139 + -0.9
1,999,145 - -0.5
1,999,145 - -1.1
1,999,177 - fliA b1922 0.12 -3.6
1,999,209 - fliA b1922 0.16 -0.2
1,999,292 - fliA b1922 0.28 -0.5
1,999,292 - fliA b1922 0.28 -1.9
1,999,302 - fliA b1922 0.29 -1.2
1,999,504 - fliA b1922 0.57 -1.3
1,999,504 - fliA b1922 0.57 +0.1
1,999,508 - fliA b1922 0.57 +2.1
1,999,509 - fliA b1922 0.58 -1.5
1,999,509 - fliA b1922 0.58 -1.1
1,999,541 + fliA b1922 0.62 -1.4
1,999,595 - fliA b1922 0.70 -0.7
1,999,600 - fliA b1922 0.70 -0.7
1,999,615 + fliA b1922 0.72 -0.7
1,999,655 + fliA b1922 0.78 -1.5
1,999,800 - -1.6
1,999,832 + +0.7
1,999,903 - -1.1
1,999,969 + -0.4
1,999,969 + -0.0
2,000,236 - -0.7
2,000,439 - fliC b1923 0.20 -1.1
2,000,523 + fliC b1923 0.26 -0.2
2,000,591 + fliC b1923 0.31 -0.3
2,000,591 + fliC b1923 0.31 -0.1
2,000,766 - fliC b1923 0.42 -1.6
2,000,772 + fliC b1923 0.43 -1.5
2,000,772 + fliC b1923 0.43 -2.5

Or see this region's nucleotide sequence