Experiment: KB with Usnic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3021 and Psyr_3022 are separated by 172 nucleotides Psyr_3022 and Psyr_3023 are separated by 493 nucleotides
Psyr_3021: Psyr_3021 - Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase, at 3,616,295 to 3,619,777
_3021
Psyr_3022: Psyr_3022 - transcriptional regulator, AsnC family, at 3,619,950 to 3,620,417
_3022
Psyr_3023: Psyr_3023 - conserved hypothetical protein, at 3,620,911 to 3,621,462
_3023
Position (kb)
3619
3620
3621 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3619.015 kb on - strand, within Psyr_3021 at 3619.023 kb on + strand, within Psyr_3021 at 3619.023 kb on + strand, within Psyr_3021 at 3619.027 kb on + strand, within Psyr_3021 at 3619.464 kb on + strand at 3619.465 kb on - strand at 3619.569 kb on + strand at 3619.570 kb on - strand at 3619.720 kb on - strand at 3619.747 kb on + strand at 3619.747 kb on + strand at 3619.747 kb on + strand at 3619.748 kb on - strand at 3619.748 kb on - strand at 3619.783 kb on + strand at 3619.798 kb on + strand at 3619.799 kb on - strand at 3619.799 kb on - strand at 3619.799 kb on - strand at 3619.800 kb on + strand at 3619.800 kb on + strand at 3619.801 kb on - strand at 3619.801 kb on - strand at 3619.850 kb on - strand at 3619.883 kb on - strand at 3620.415 kb on + strand at 3620.415 kb on + strand at 3620.423 kb on - strand at 3620.423 kb on - strand at 3620.424 kb on + strand at 3620.424 kb on + strand at 3620.424 kb on + strand at 3620.425 kb on - strand at 3620.425 kb on - strand at 3620.425 kb on - strand at 3620.425 kb on - strand at 3620.574 kb on + strand at 3620.787 kb on + strand at 3620.842 kb on + strand at 3620.843 kb on - strand at 3620.905 kb on + strand at 3620.905 kb on + strand at 3620.905 kb on + strand at 3620.906 kb on - strand at 3620.906 kb on - strand at 3620.933 kb on + strand at 3620.934 kb on - strand at 3620.934 kb on - strand at 3621.033 kb on - strand, within Psyr_3023 at 3621.033 kb on - strand, within Psyr_3023 at 3621.033 kb on - strand, within Psyr_3023 at 3621.033 kb on - strand, within Psyr_3023 at 3621.033 kb on - strand, within Psyr_3023 at 3621.064 kb on + strand, within Psyr_3023 at 3621.064 kb on + strand, within Psyr_3023 at 3621.214 kb on + strand, within Psyr_3023 at 3621.215 kb on - strand, within Psyr_3023 at 3621.215 kb on - strand, within Psyr_3023 at 3621.215 kb on - strand, within Psyr_3023 at 3621.394 kb on + strand, within Psyr_3023 at 3621.395 kb on - strand, within Psyr_3023
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM remove 3,619,015 - Psyr_3021 0.78 +0.0 3,619,023 + Psyr_3021 0.78 +0.6 3,619,023 + Psyr_3021 0.78 -0.2 3,619,027 + Psyr_3021 0.78 +1.0 3,619,464 + -0.4 3,619,465 - -0.8 3,619,569 + +0.7 3,619,570 - +1.0 3,619,720 - -2.6 3,619,747 + +0.0 3,619,747 + +0.2 3,619,747 + +0.1 3,619,748 - -0.6 3,619,748 - +0.4 3,619,783 + +0.6 3,619,798 + -0.3 3,619,799 - -0.5 3,619,799 - +0.0 3,619,799 - +0.0 3,619,800 + -0.0 3,619,800 + -0.4 3,619,801 - +0.8 3,619,801 - +0.5 3,619,850 - -0.6 3,619,883 - +0.6 3,620,415 + -0.6 3,620,415 + +0.3 3,620,423 - -0.2 3,620,423 - -1.1 3,620,424 + +0.7 3,620,424 + -1.6 3,620,424 + +0.8 3,620,425 - +0.0 3,620,425 - -0.9 3,620,425 - +0.6 3,620,425 - -0.3 3,620,574 + -0.1 3,620,787 + +3.0 3,620,842 + -0.6 3,620,843 - -0.5 3,620,905 + +0.9 3,620,905 + -0.1 3,620,905 + -0.8 3,620,906 - -1.4 3,620,906 - +0.0 3,620,933 + +0.6 3,620,934 - +0.7 3,620,934 - -0.7 3,621,033 - Psyr_3023 0.22 +2.2 3,621,033 - Psyr_3023 0.22 -0.1 3,621,033 - Psyr_3023 0.22 +0.4 3,621,033 - Psyr_3023 0.22 +0.4 3,621,033 - Psyr_3023 0.22 +0.4 3,621,064 + Psyr_3023 0.28 +1.1 3,621,064 + Psyr_3023 0.28 +0.1 3,621,214 + Psyr_3023 0.55 +0.5 3,621,215 - Psyr_3023 0.55 +1.6 3,621,215 - Psyr_3023 0.55 +0.5 3,621,215 - Psyr_3023 0.55 -1.2 3,621,394 + Psyr_3023 0.88 +0.4 3,621,395 - Psyr_3023 0.88 -0.4
Or see this region's nucleotide sequence