Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3022

Experiment: KB with Usnic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3021 and Psyr_3022 are separated by 172 nucleotidesPsyr_3022 and Psyr_3023 are separated by 493 nucleotides Psyr_3021: Psyr_3021 - Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase, at 3,616,295 to 3,619,777 _3021 Psyr_3022: Psyr_3022 - transcriptional regulator, AsnC family, at 3,619,950 to 3,620,417 _3022 Psyr_3023: Psyr_3023 - conserved hypothetical protein, at 3,620,911 to 3,621,462 _3023 Position (kb) 3619 3620 3621Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3619.015 kb on - strand, within Psyr_3021at 3619.023 kb on + strand, within Psyr_3021at 3619.023 kb on + strand, within Psyr_3021at 3619.027 kb on + strand, within Psyr_3021at 3619.464 kb on + strandat 3619.465 kb on - strandat 3619.569 kb on + strandat 3619.570 kb on - strandat 3619.720 kb on - strandat 3619.747 kb on + strandat 3619.747 kb on + strandat 3619.747 kb on + strandat 3619.748 kb on - strandat 3619.748 kb on - strandat 3619.783 kb on + strandat 3619.798 kb on + strandat 3619.799 kb on - strandat 3619.799 kb on - strandat 3619.799 kb on - strandat 3619.800 kb on + strandat 3619.800 kb on + strandat 3619.801 kb on - strandat 3619.801 kb on - strandat 3619.850 kb on - strandat 3619.883 kb on - strandat 3620.415 kb on + strandat 3620.415 kb on + strandat 3620.423 kb on - strandat 3620.423 kb on - strandat 3620.424 kb on + strandat 3620.424 kb on + strandat 3620.424 kb on + strandat 3620.425 kb on - strandat 3620.425 kb on - strandat 3620.425 kb on - strandat 3620.425 kb on - strandat 3620.574 kb on + strandat 3620.787 kb on + strandat 3620.842 kb on + strandat 3620.843 kb on - strandat 3620.905 kb on + strandat 3620.905 kb on + strandat 3620.905 kb on + strandat 3620.906 kb on - strandat 3620.906 kb on - strandat 3620.933 kb on + strandat 3620.934 kb on - strandat 3620.934 kb on - strandat 3621.033 kb on - strand, within Psyr_3023at 3621.033 kb on - strand, within Psyr_3023at 3621.033 kb on - strand, within Psyr_3023at 3621.033 kb on - strand, within Psyr_3023at 3621.033 kb on - strand, within Psyr_3023at 3621.064 kb on + strand, within Psyr_3023at 3621.064 kb on + strand, within Psyr_3023at 3621.214 kb on + strand, within Psyr_3023at 3621.215 kb on - strand, within Psyr_3023at 3621.215 kb on - strand, within Psyr_3023at 3621.215 kb on - strand, within Psyr_3023at 3621.394 kb on + strand, within Psyr_3023at 3621.395 kb on - strand, within Psyr_3023

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM
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3,619,015 - Psyr_3021 0.78 +0.0
3,619,023 + Psyr_3021 0.78 +0.6
3,619,023 + Psyr_3021 0.78 -0.2
3,619,027 + Psyr_3021 0.78 +1.0
3,619,464 + -0.4
3,619,465 - -0.8
3,619,569 + +0.7
3,619,570 - +1.0
3,619,720 - -2.6
3,619,747 + +0.0
3,619,747 + +0.2
3,619,747 + +0.1
3,619,748 - -0.6
3,619,748 - +0.4
3,619,783 + +0.6
3,619,798 + -0.3
3,619,799 - -0.5
3,619,799 - +0.0
3,619,799 - +0.0
3,619,800 + -0.0
3,619,800 + -0.4
3,619,801 - +0.8
3,619,801 - +0.5
3,619,850 - -0.6
3,619,883 - +0.6
3,620,415 + -0.6
3,620,415 + +0.3
3,620,423 - -0.2
3,620,423 - -1.1
3,620,424 + +0.7
3,620,424 + -1.6
3,620,424 + +0.8
3,620,425 - +0.0
3,620,425 - -0.9
3,620,425 - +0.6
3,620,425 - -0.3
3,620,574 + -0.1
3,620,787 + +3.0
3,620,842 + -0.6
3,620,843 - -0.5
3,620,905 + +0.9
3,620,905 + -0.1
3,620,905 + -0.8
3,620,906 - -1.4
3,620,906 - +0.0
3,620,933 + +0.6
3,620,934 - +0.7
3,620,934 - -0.7
3,621,033 - Psyr_3023 0.22 +2.2
3,621,033 - Psyr_3023 0.22 -0.1
3,621,033 - Psyr_3023 0.22 +0.4
3,621,033 - Psyr_3023 0.22 +0.4
3,621,033 - Psyr_3023 0.22 +0.4
3,621,064 + Psyr_3023 0.28 +1.1
3,621,064 + Psyr_3023 0.28 +0.1
3,621,214 + Psyr_3023 0.55 +0.5
3,621,215 - Psyr_3023 0.55 +1.6
3,621,215 - Psyr_3023 0.55 +0.5
3,621,215 - Psyr_3023 0.55 -1.2
3,621,394 + Psyr_3023 0.88 +0.4
3,621,395 - Psyr_3023 0.88 -0.4

Or see this region's nucleotide sequence