Experiment: KB with Usnic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0721 and Psyr_0722 are separated by 112 nucleotides Psyr_0722 and Psyr_0723 are separated by 2 nucleotides
Psyr_0721: Psyr_0721 - glycine oxidase, at 824,797 to 825,900
_0721
Psyr_0722: Psyr_0722 - Two-component response regulator PilR, at 826,013 to 827,350
_0722
Psyr_0723: Psyr_0723 - Sensor protein PilS, at 827,353 to 828,945
_0723
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 825.080 kb on - strand, within Psyr_0721 at 825.157 kb on - strand, within Psyr_0721 at 825.167 kb on + strand, within Psyr_0721 at 825.200 kb on - strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.485 kb on - strand, within Psyr_0721 at 825.485 kb on - strand, within Psyr_0721 at 825.485 kb on - strand, within Psyr_0721 at 825.561 kb on + strand, within Psyr_0721 at 825.561 kb on + strand, within Psyr_0721 at 825.562 kb on - strand, within Psyr_0721 at 825.872 kb on - strand at 825.898 kb on + strand at 825.899 kb on - strand at 825.899 kb on - strand at 825.899 kb on - strand at 825.899 kb on - strand at 825.938 kb on + strand at 825.939 kb on - strand at 825.939 kb on - strand at 825.939 kb on - strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 826.149 kb on + strand, within Psyr_0722 at 826.150 kb on - strand, within Psyr_0722 at 826.150 kb on - strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.922 kb on - strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.246 kb on - strand at 827.324 kb on + strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.420 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.599 kb on + strand, within Psyr_0723 at 827.599 kb on + strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.643 kb on - strand, within Psyr_0723 at 827.866 kb on - strand, within Psyr_0723 at 827.866 kb on - strand, within Psyr_0723 at 827.983 kb on + strand, within Psyr_0723 at 827.983 kb on + strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM remove 825,080 - Psyr_0721 0.26 -0.4 825,157 - Psyr_0721 0.33 -0.1 825,167 + Psyr_0721 0.34 +0.5 825,200 - Psyr_0721 0.37 -0.6 825,214 + Psyr_0721 0.38 -2.4 825,214 + Psyr_0721 0.38 -0.0 825,214 + Psyr_0721 0.38 -0.2 825,214 + Psyr_0721 0.38 -0.8 825,214 + Psyr_0721 0.38 -2.1 825,214 + Psyr_0721 0.38 +0.8 825,214 + Psyr_0721 0.38 -1.0 825,214 + Psyr_0721 0.38 +0.7 825,214 + Psyr_0721 0.38 -0.2 825,214 + Psyr_0721 0.38 +0.4 825,214 + Psyr_0721 0.38 -1.3 825,214 + Psyr_0721 0.38 -0.8 825,214 + Psyr_0721 0.38 -0.2 825,214 + Psyr_0721 0.38 -0.7 825,215 - Psyr_0721 0.38 -0.7 825,215 - Psyr_0721 0.38 -0.8 825,215 - Psyr_0721 0.38 -0.1 825,215 - Psyr_0721 0.38 +1.2 825,215 - Psyr_0721 0.38 -0.1 825,215 - Psyr_0721 0.38 -0.9 825,215 - Psyr_0721 0.38 -0.9 825,236 + Psyr_0721 0.40 -1.2 825,236 + Psyr_0721 0.40 +0.2 825,237 - Psyr_0721 0.40 +0.0 825,237 - Psyr_0721 0.40 +0.1 825,237 - Psyr_0721 0.40 -0.3 825,237 - Psyr_0721 0.40 +0.6 825,484 + Psyr_0721 0.62 +0.4 825,484 + Psyr_0721 0.62 -0.1 825,484 + Psyr_0721 0.62 +0.2 825,485 - Psyr_0721 0.62 -1.1 825,485 - Psyr_0721 0.62 -1.1 825,485 - Psyr_0721 0.62 -0.2 825,561 + Psyr_0721 0.69 -0.5 825,561 + Psyr_0721 0.69 -0.9 825,562 - Psyr_0721 0.69 -0.3 825,872 - -0.7 825,898 + +0.2 825,899 - +0.8 825,899 - +2.2 825,899 - +0.2 825,899 - -0.2 825,938 + -2.3 825,939 - +0.6 825,939 - +0.8 825,939 - +1.1 825,991 + -0.0 825,991 + +0.5 825,991 + -0.6 825,991 + -1.4 825,991 + -0.7 825,991 + -0.9 825,991 + +0.0 825,991 + -1.4 825,991 + -0.9 825,991 + +1.0 825,991 + +0.8 825,991 + +1.8 825,991 + -3.1 825,991 + +0.5 825,991 + +0.6 825,991 + +0.2 825,992 - -2.4 825,992 - +0.4 825,992 - -0.1 825,992 - -0.5 825,992 - +0.1 825,992 - -1.6 825,992 - +0.2 825,992 - -0.6 825,992 - -0.2 825,992 - -0.6 825,992 - -2.5 825,992 - +0.3 825,992 - -0.3 825,992 - +0.0 825,992 - +1.4 825,992 - +1.6 826,149 + Psyr_0722 0.10 -0.1 826,150 - Psyr_0722 0.10 -0.1 826,150 - Psyr_0722 0.10 +0.1 826,473 + Psyr_0722 0.34 -0.4 826,473 + Psyr_0722 0.34 +0.6 826,473 + Psyr_0722 0.34 +0.1 826,473 + Psyr_0722 0.34 +0.3 826,474 - Psyr_0722 0.34 -1.6 826,474 - Psyr_0722 0.34 +0.1 826,872 + Psyr_0722 0.64 +0.6 826,872 + Psyr_0722 0.64 +0.8 826,873 - Psyr_0722 0.64 -1.0 826,873 - Psyr_0722 0.64 +3.2 826,921 + Psyr_0722 0.68 +1.7 826,921 + Psyr_0722 0.68 -0.0 826,922 - Psyr_0722 0.68 -0.1 827,141 + Psyr_0722 0.84 +0.5 827,141 + Psyr_0722 0.84 -0.7 827,141 + Psyr_0722 0.84 -0.1 827,141 + Psyr_0722 0.84 -0.6 827,141 + Psyr_0722 0.84 -0.5 827,141 + Psyr_0722 0.84 +1.5 827,141 + Psyr_0722 0.84 -1.2 827,141 + Psyr_0722 0.84 +1.0 827,141 + Psyr_0722 0.84 -0.5 827,141 + Psyr_0722 0.84 -0.6 827,142 - Psyr_0722 0.84 -0.3 827,142 - Psyr_0722 0.84 +0.6 827,142 - Psyr_0722 0.84 -1.9 827,142 - Psyr_0722 0.84 +0.2 827,142 - Psyr_0722 0.84 -0.2 827,142 - Psyr_0722 0.84 -1.2 827,142 - Psyr_0722 0.84 -1.3 827,246 - +0.4 827,324 + -0.3 827,383 - -0.3 827,383 - +0.6 827,420 + -0.9 827,465 + -0.7 827,465 + -0.6 827,465 + +0.2 827,465 + -2.0 827,465 + +0.6 827,465 + +1.0 827,465 + +0.6 827,465 + -0.0 827,465 + +0.2 827,466 - -0.9 827,466 - -0.3 827,466 - +0.5 827,466 - -1.0 827,466 - +0.2 827,466 - +0.4 827,466 - -0.4 827,467 + +0.4 827,467 + +0.4 827,467 + -0.6 827,467 + -2.2 827,467 + +1.0 827,467 + +0.6 827,467 + +0.5 827,467 + +0.2 827,467 + -0.6 827,467 + +0.5 827,467 + -0.4 827,467 + -0.2 827,467 + -0.1 827,467 + -0.5 827,468 - +0.7 827,468 - +0.0 827,468 - +0.7 827,468 - +2.8 827,468 - -1.1 827,468 - +1.4 827,468 - +0.1 827,468 - -0.9 827,468 - +0.7 827,468 - +0.6 827,599 + Psyr_0723 0.15 -0.6 827,599 + Psyr_0723 0.15 +1.2 827,600 - Psyr_0723 0.16 +0.0 827,600 - Psyr_0723 0.16 -1.1 827,600 - Psyr_0723 0.16 +0.5 827,600 - Psyr_0723 0.16 -0.7 827,643 - Psyr_0723 0.18 +0.5 827,866 - Psyr_0723 0.32 +0.4 827,866 - Psyr_0723 0.32 -0.7 827,983 + Psyr_0723 0.40 -1.1 827,983 + Psyr_0723 0.40 -1.3 827,984 - Psyr_0723 0.40 +0.7 828,268 + Psyr_0723 0.57 -1.3 828,268 + Psyr_0723 0.57 +0.8 828,268 + Psyr_0723 0.57 -0.0 828,269 - Psyr_0723 0.58 +0.3 828,269 - Psyr_0723 0.58 -1.0
Or see this region's nucleotide sequence