Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0552

Experiment: KB with Usnic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0551 and Psyr_0552 overlap by 4 nucleotidesPsyr_0552 and Psyr_0553 overlap by 4 nucleotidesPsyr_0553 and Psyr_0554 are separated by 10 nucleotides Psyr_0551: Psyr_0551 - DNA topoisomerase IV subunit B, at 622,501 to 624,405 _0551 Psyr_0552: Psyr_0552 - conserved hypothetical protein, at 624,402 to 625,379 _0552 Psyr_0553: Psyr_0553 - conserved hypothetical protein, at 625,376 to 625,897 _0553 Psyr_0554: Psyr_0554 - DNA topoisomerase IV subunit A, at 625,908 to 628,163 _0554 Position (kb) 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2 3at 624.585 kb on + strand, within Psyr_0552at 624.585 kb on + strand, within Psyr_0552at 624.585 kb on + strand, within Psyr_0552at 624.632 kb on + strand, within Psyr_0552at 624.632 kb on + strand, within Psyr_0552at 624.632 kb on + strand, within Psyr_0552at 624.632 kb on + strand, within Psyr_0552at 624.657 kb on + strand, within Psyr_0552at 624.657 kb on + strand, within Psyr_0552at 624.657 kb on + strand, within Psyr_0552at 624.658 kb on - strand, within Psyr_0552at 625.098 kb on + strand, within Psyr_0552at 625.099 kb on - strand, within Psyr_0552at 625.135 kb on - strand, within Psyr_0552at 625.292 kb on + strandat 625.529 kb on + strand, within Psyr_0553at 625.531 kb on + strand, within Psyr_0553at 625.531 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.533 kb on + strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553at 625.534 kb on - strand, within Psyr_0553

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM
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624,585 + Psyr_0552 0.19 +1.3
624,585 + Psyr_0552 0.19 -0.4
624,585 + Psyr_0552 0.19 -0.9
624,632 + Psyr_0552 0.24 +0.6
624,632 + Psyr_0552 0.24 +1.9
624,632 + Psyr_0552 0.24 +0.3
624,632 + Psyr_0552 0.24 -0.8
624,657 + Psyr_0552 0.26 +0.6
624,657 + Psyr_0552 0.26 +0.1
624,657 + Psyr_0552 0.26 +1.1
624,658 - Psyr_0552 0.26 -0.9
625,098 + Psyr_0552 0.71 +0.7
625,099 - Psyr_0552 0.71 +0.4
625,135 - Psyr_0552 0.75 -2.5
625,292 + +0.1
625,529 + Psyr_0553 0.29 +0.4
625,531 + Psyr_0553 0.30 +0.2
625,531 + Psyr_0553 0.30 +0.6
625,533 + Psyr_0553 0.30 +0.4
625,533 + Psyr_0553 0.30 +2.2
625,533 + Psyr_0553 0.30 +0.2
625,533 + Psyr_0553 0.30 +0.2
625,533 + Psyr_0553 0.30 +0.5
625,533 + Psyr_0553 0.30 +0.7
625,533 + Psyr_0553 0.30 -0.2
625,533 + Psyr_0553 0.30 +0.3
625,533 + Psyr_0553 0.30 -0.4
625,533 + Psyr_0553 0.30 +0.2
625,533 + Psyr_0553 0.30 +0.3
625,533 + Psyr_0553 0.30 -0.3
625,533 + Psyr_0553 0.30 -0.1
625,533 + Psyr_0553 0.30 -1.2
625,533 + Psyr_0553 0.30 +0.5
625,533 + Psyr_0553 0.30 -1.1
625,533 + Psyr_0553 0.30 -0.9
625,534 - Psyr_0553 0.30 +0.8
625,534 - Psyr_0553 0.30 +2.0
625,534 - Psyr_0553 0.30 -0.5
625,534 - Psyr_0553 0.30 -1.4
625,534 - Psyr_0553 0.30 -0.6
625,534 - Psyr_0553 0.30 +0.0
625,534 - Psyr_0553 0.30 +0.2
625,534 - Psyr_0553 0.30 +3.2
625,534 - Psyr_0553 0.30 -1.1
625,534 - Psyr_0553 0.30 -0.2

Or see this region's nucleotide sequence