Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1279

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1278 and Psyr_1279 are separated by 90 nucleotidesPsyr_1279 and Psyr_1280 are separated by 12 nucleotides Psyr_1278: Psyr_1278 - Citrate-proton symport, at 1,443,602 to 1,444,972 _1278 Psyr_1279: Psyr_1279 - CBS:Transporter-associated region, at 1,445,063 to 1,446,310 _1279 Psyr_1280: Psyr_1280 - Cytochrome c assembly protein, at 1,446,323 to 1,447,177 _1280 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -1 0 1 2at 1444.068 kb on + strand, within Psyr_1278at 1444.068 kb on + strand, within Psyr_1278at 1444.068 kb on + strand, within Psyr_1278at 1444.069 kb on - strand, within Psyr_1278at 1444.089 kb on + strand, within Psyr_1278at 1444.114 kb on + strand, within Psyr_1278at 1444.115 kb on - strand, within Psyr_1278at 1444.116 kb on + strand, within Psyr_1278at 1444.116 kb on + strand, within Psyr_1278at 1444.116 kb on + strand, within Psyr_1278at 1444.117 kb on - strand, within Psyr_1278at 1444.117 kb on - strand, within Psyr_1278at 1444.117 kb on - strand, within Psyr_1278at 1444.269 kb on + strand, within Psyr_1278at 1444.269 kb on + strand, within Psyr_1278at 1444.269 kb on + strand, within Psyr_1278at 1444.269 kb on + strand, within Psyr_1278at 1444.270 kb on - strand, within Psyr_1278at 1444.270 kb on - strand, within Psyr_1278at 1444.270 kb on - strand, within Psyr_1278at 1444.571 kb on + strand, within Psyr_1278at 1444.571 kb on + strand, within Psyr_1278at 1444.572 kb on - strand, within Psyr_1278at 1444.788 kb on + strand, within Psyr_1278at 1444.788 kb on + strand, within Psyr_1278at 1444.788 kb on + strand, within Psyr_1278at 1444.789 kb on - strand, within Psyr_1278at 1444.789 kb on - strand, within Psyr_1278at 1444.789 kb on - strand, within Psyr_1278at 1444.794 kb on + strand, within Psyr_1278at 1444.794 kb on + strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.795 kb on - strand, within Psyr_1278at 1444.804 kb on - strand, within Psyr_1278at 1444.804 kb on - strand, within Psyr_1278at 1444.955 kb on - strandat 1444.974 kb on + strandat 1444.975 kb on - strandat 1444.975 kb on - strandat 1445.046 kb on + strandat 1445.046 kb on + strandat 1445.047 kb on - strandat 1445.047 kb on - strandat 1445.047 kb on - strandat 1445.064 kb on + strandat 1445.064 kb on + strandat 1445.064 kb on + strandat 1445.064 kb on + strandat 1445.065 kb on - strandat 1445.065 kb on - strandat 1445.065 kb on - strandat 1445.380 kb on + strand, within Psyr_1279at 1445.502 kb on + strand, within Psyr_1279at 1445.502 kb on + strand, within Psyr_1279at 1445.511 kb on + strand, within Psyr_1279at 1445.617 kb on - strand, within Psyr_1279at 1445.617 kb on - strand, within Psyr_1279at 1445.731 kb on + strand, within Psyr_1279at 1445.809 kb on + strand, within Psyr_1279at 1445.810 kb on - strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.905 kb on - strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.064 kb on - strand, within Psyr_1279at 1446.072 kb on + strand, within Psyr_1279at 1446.073 kb on - strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.366 kb on + strandat 1446.367 kb on - strandat 1446.416 kb on - strand, within Psyr_1280at 1446.667 kb on - strand, within Psyr_1280at 1446.742 kb on + strand, within Psyr_1280at 1446.743 kb on - strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.828 kb on - strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.178 kb on - strandat 1447.178 kb on - strandat 1447.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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1,444,068 + Psyr_1278 0.34 +0.9
1,444,068 + Psyr_1278 0.34 +0.5
1,444,068 + Psyr_1278 0.34 +0.8
1,444,069 - Psyr_1278 0.34 -0.3
1,444,089 + Psyr_1278 0.36 +0.3
1,444,114 + Psyr_1278 0.37 +0.3
1,444,115 - Psyr_1278 0.37 -1.6
1,444,116 + Psyr_1278 0.37 +1.2
1,444,116 + Psyr_1278 0.37 +0.3
1,444,116 + Psyr_1278 0.37 -1.1
1,444,117 - Psyr_1278 0.38 -0.3
1,444,117 - Psyr_1278 0.38 -0.4
1,444,117 - Psyr_1278 0.38 -0.3
1,444,269 + Psyr_1278 0.49 +0.6
1,444,269 + Psyr_1278 0.49 +0.3
1,444,269 + Psyr_1278 0.49 +0.5
1,444,269 + Psyr_1278 0.49 +0.3
1,444,270 - Psyr_1278 0.49 -0.4
1,444,270 - Psyr_1278 0.49 +0.0
1,444,270 - Psyr_1278 0.49 +0.6
1,444,571 + Psyr_1278 0.71 +0.5
1,444,571 + Psyr_1278 0.71 -1.1
1,444,572 - Psyr_1278 0.71 -0.2
1,444,788 + Psyr_1278 0.87 +0.0
1,444,788 + Psyr_1278 0.87 -0.2
1,444,788 + Psyr_1278 0.87 +1.2
1,444,789 - Psyr_1278 0.87 -0.2
1,444,789 - Psyr_1278 0.87 -0.3
1,444,789 - Psyr_1278 0.87 +0.5
1,444,794 + Psyr_1278 0.87 -0.6
1,444,794 + Psyr_1278 0.87 +0.7
1,444,795 - Psyr_1278 0.87 +0.2
1,444,795 - Psyr_1278 0.87 -0.4
1,444,795 - Psyr_1278 0.87 +0.2
1,444,795 - Psyr_1278 0.87 +1.1
1,444,795 - Psyr_1278 0.87 +0.2
1,444,795 - Psyr_1278 0.87 +0.3
1,444,795 - Psyr_1278 0.87 +0.1
1,444,804 - Psyr_1278 0.88 -0.5
1,444,804 - Psyr_1278 0.88 -0.5
1,444,955 - +0.2
1,444,974 + +0.2
1,444,975 - +1.6
1,444,975 - +1.2
1,445,046 + +1.0
1,445,046 + -0.7
1,445,047 - -0.2
1,445,047 - -0.2
1,445,047 - -0.1
1,445,064 + -0.1
1,445,064 + -0.6
1,445,064 + +0.1
1,445,064 + +0.0
1,445,065 - +0.7
1,445,065 - -0.1
1,445,065 - -0.4
1,445,380 + Psyr_1279 0.25 +0.8
1,445,502 + Psyr_1279 0.35 +0.4
1,445,502 + Psyr_1279 0.35 -0.1
1,445,511 + Psyr_1279 0.36 +1.2
1,445,617 - Psyr_1279 0.44 -0.5
1,445,617 - Psyr_1279 0.44 -0.1
1,445,731 + Psyr_1279 0.54 +0.3
1,445,809 + Psyr_1279 0.60 +1.5
1,445,810 - Psyr_1279 0.60 +0.1
1,445,904 + Psyr_1279 0.67 +0.9
1,445,904 + Psyr_1279 0.67 +1.4
1,445,904 + Psyr_1279 0.67 +2.1
1,445,904 + Psyr_1279 0.67 +1.9
1,445,904 + Psyr_1279 0.67 +1.1
1,445,905 - Psyr_1279 0.67 +0.6
1,446,003 + Psyr_1279 0.75 -0.7
1,446,003 + Psyr_1279 0.75 -0.1
1,446,003 + Psyr_1279 0.75 -0.6
1,446,003 + Psyr_1279 0.75 +0.6
1,446,003 + Psyr_1279 0.75 -0.6
1,446,004 - Psyr_1279 0.75 -0.1
1,446,004 - Psyr_1279 0.75 -0.1
1,446,004 - Psyr_1279 0.75 +0.2
1,446,004 - Psyr_1279 0.75 -0.2
1,446,064 - Psyr_1279 0.80 +1.6
1,446,072 + Psyr_1279 0.81 -1.6
1,446,073 - Psyr_1279 0.81 +0.4
1,446,124 + Psyr_1279 0.85 +0.4
1,446,124 + Psyr_1279 0.85 -0.2
1,446,124 + Psyr_1279 0.85 +0.1
1,446,366 + -0.7
1,446,367 - +0.3
1,446,416 - Psyr_1280 0.11 +0.2
1,446,667 - Psyr_1280 0.40 -0.3
1,446,742 + Psyr_1280 0.49 -0.9
1,446,743 - Psyr_1280 0.49 +0.5
1,446,812 + Psyr_1280 0.57 -0.6
1,446,812 + Psyr_1280 0.57 -0.4
1,446,812 + Psyr_1280 0.57 +1.2
1,446,812 + Psyr_1280 0.57 -1.3
1,446,813 - Psyr_1280 0.57 -0.1
1,446,813 - Psyr_1280 0.57 -0.6
1,446,828 - Psyr_1280 0.59 -0.8
1,447,083 + Psyr_1280 0.89 +0.7
1,447,083 + Psyr_1280 0.89 +0.2
1,447,083 + Psyr_1280 0.89 -0.4
1,447,083 + Psyr_1280 0.89 -0.3
1,447,084 - Psyr_1280 0.89 +0.1
1,447,084 - Psyr_1280 0.89 -0.8
1,447,084 - Psyr_1280 0.89 +0.4
1,447,135 + -1.1
1,447,135 + +0.2
1,447,135 + -0.4
1,447,135 + -0.2
1,447,135 + -0.5
1,447,135 + +0.3
1,447,135 + +0.2
1,447,136 - +1.0
1,447,136 - -0.9
1,447,136 - -0.2
1,447,136 - +0.1
1,447,136 - -0.2
1,447,177 + -0.5
1,447,177 + -0.7
1,447,177 + -1.3
1,447,177 + +0.9
1,447,178 - +1.0
1,447,178 - -1.1
1,447,244 + +0.1

Or see this region's nucleotide sequence