Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1085

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1084 and Psyr_1085 are separated by 583 nucleotidesPsyr_1085 and Psyr_1086 are separated by 156 nucleotides Psyr_1084: Psyr_1084 - Histone-like bacterial DNA-binding protein, at 1,225,706 to 1,225,987 _1084 Psyr_1085: Psyr_1085 - 23S rRNA m(6)A-1618 methyltransferase, at 1,226,571 to 1,227,557 _1085 Psyr_1086: Psyr_1086 - valyl-tRNA synthetase, at 1,227,714 to 1,230,560 _1086 Position (kb) 1226 1227 1228Strain fitness (log2 ratio) -1 0 1 2at 1225.589 kb on + strandat 1225.593 kb on + strandat 1225.593 kb on + strandat 1225.593 kb on + strandat 1225.620 kb on + strandat 1225.715 kb on - strandat 1225.715 kb on - strandat 1225.717 kb on + strandat 1225.718 kb on - strandat 1225.778 kb on - strand, within Psyr_1084at 1225.939 kb on + strand, within Psyr_1084at 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.985 kb on + strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1225.986 kb on - strandat 1226.242 kb on + strandat 1226.403 kb on - strandat 1226.537 kb on - strandat 1226.653 kb on - strandat 1227.115 kb on + strand, within Psyr_1085at 1227.115 kb on + strand, within Psyr_1085at 1227.116 kb on - strand, within Psyr_1085at 1227.116 kb on - strand, within Psyr_1085at 1227.116 kb on - strand, within Psyr_1085at 1227.139 kb on + strand, within Psyr_1085at 1227.139 kb on + strand, within Psyr_1085at 1227.244 kb on + strand, within Psyr_1085at 1227.310 kb on + strand, within Psyr_1085at 1227.595 kb on + strandat 1227.648 kb on + strandat 1227.649 kb on - strandat 1227.649 kb on - strandat 1227.657 kb on - strandat 1227.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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1,225,589 + +0.0
1,225,593 + +0.6
1,225,593 + -1.1
1,225,593 + +2.4
1,225,620 + +0.1
1,225,715 - +0.1
1,225,715 - -0.1
1,225,717 + -1.6
1,225,718 - -1.4
1,225,778 - Psyr_1084 0.26 +0.1
1,225,939 + Psyr_1084 0.83 +1.1
1,225,985 + +2.5
1,225,985 + -0.1
1,225,985 + -0.3
1,225,985 + -0.3
1,225,985 + -0.6
1,225,985 + -1.4
1,225,985 + +0.6
1,225,985 + +0.3
1,225,985 + +0.7
1,225,986 - -0.4
1,225,986 - -0.7
1,225,986 - -1.6
1,225,986 - -0.2
1,225,986 - +0.2
1,225,986 - -0.1
1,225,986 - -0.3
1,225,986 - -0.5
1,225,986 - -0.3
1,225,986 - -0.5
1,225,986 - -0.4
1,226,242 + +0.8
1,226,403 - +0.3
1,226,537 - +0.3
1,226,653 - +0.7
1,227,115 + Psyr_1085 0.55 +0.3
1,227,115 + Psyr_1085 0.55 -0.0
1,227,116 - Psyr_1085 0.55 -0.9
1,227,116 - Psyr_1085 0.55 +0.5
1,227,116 - Psyr_1085 0.55 +0.8
1,227,139 + Psyr_1085 0.58 +1.0
1,227,139 + Psyr_1085 0.58 +0.4
1,227,244 + Psyr_1085 0.68 -0.2
1,227,310 + Psyr_1085 0.75 -0.6
1,227,595 + -0.3
1,227,648 + -0.5
1,227,649 - +0.6
1,227,649 - +0.2
1,227,657 - -0.3
1,227,715 + -0.1

Or see this region's nucleotide sequence