Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4402 and Psyr_4403 are separated by 24 nucleotides Psyr_4403 and Psyr_4404 are separated by 316 nucleotides
Psyr_4402: Psyr_4402 - [LSU ribosomal protein L11P]-lysine N-methyltransferase, at 5,263,765 to 5,264,643
_4402
Psyr_4403: Psyr_4403 - conserved hypothetical protein, at 5,264,668 to 5,265,990
_4403
Psyr_4404: Psyr_4404 - tRNA-U20-dihydrouridine synthase, at 5,266,307 to 5,267,320
_4404
Position (kb) 5264
5265
5266 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5263.687 kb on - strand at 5263.687 kb on - strand at 5263.692 kb on + strand at 5263.729 kb on + strand at 5263.730 kb on - strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.757 kb on - strand at 5263.816 kb on + strand at 5263.816 kb on + strand at 5263.817 kb on - strand at 5263.817 kb on - strand at 5263.903 kb on - strand, within Psyr_4402 at 5264.065 kb on - strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.402 kb on - strand, within Psyr_4402 at 5265.144 kb on + strand, within Psyr_4403 at 5265.153 kb on + strand, within Psyr_4403 at 5265.154 kb on - strand, within Psyr_4403 at 5265.479 kb on + strand, within Psyr_4403 at 5265.480 kb on - strand, within Psyr_4403 at 5265.546 kb on - strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.761 kb on - strand, within Psyr_4403 at 5265.761 kb on - strand, within Psyr_4403 at 5265.761 kb on - strand, within Psyr_4403 at 5265.761 kb on - strand, within Psyr_4403 at 5265.863 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5266.148 kb on + strand at 5266.300 kb on + strand at 5266.331 kb on + strand at 5266.331 kb on + strand at 5266.331 kb on + strand at 5266.331 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.716 kb on + strand, within Psyr_4404 at 5266.716 kb on + strand, within Psyr_4404 at 5266.844 kb on + strand, within Psyr_4404 at 5266.862 kb on + strand, within Psyr_4404
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 5,263,687 - -1.6 5,263,687 - +1.0 5,263,692 + +0.9 5,263,729 + -0.1 5,263,730 - -0.7 5,263,739 + +3.3 5,263,739 + -0.1 5,263,739 + +0.1 5,263,739 + -0.9 5,263,740 - -0.6 5,263,740 - +0.9 5,263,757 - +0.5 5,263,816 + -0.3 5,263,816 + -0.8 5,263,817 - +0.3 5,263,817 - -0.7 5,263,903 - Psyr_4402 0.16 -0.6 5,264,065 - Psyr_4402 0.34 -0.1 5,264,401 + Psyr_4402 0.72 -1.5 5,264,401 + Psyr_4402 0.72 -0.7 5,264,402 - Psyr_4402 0.72 +1.3 5,265,144 + Psyr_4403 0.36 -1.7 5,265,153 + Psyr_4403 0.37 -0.6 5,265,154 - Psyr_4403 0.37 -0.4 5,265,479 + Psyr_4403 0.61 +0.0 5,265,480 - Psyr_4403 0.61 +0.3 5,265,546 - Psyr_4403 0.66 +0.8 5,265,574 + Psyr_4403 0.68 +0.5 5,265,574 + Psyr_4403 0.68 -1.3 5,265,574 + Psyr_4403 0.68 -1.9 5,265,574 + Psyr_4403 0.68 +0.5 5,265,574 + Psyr_4403 0.68 +0.7 5,265,574 + Psyr_4403 0.68 +0.9 5,265,574 + Psyr_4403 0.68 +1.3 5,265,575 - Psyr_4403 0.69 -0.4 5,265,575 - Psyr_4403 0.69 +1.3 5,265,575 - Psyr_4403 0.69 -0.9 5,265,575 - Psyr_4403 0.69 +0.3 5,265,575 - Psyr_4403 0.69 -0.2 5,265,575 - Psyr_4403 0.69 -0.9 5,265,760 + Psyr_4403 0.83 +0.5 5,265,760 + Psyr_4403 0.83 -0.4 5,265,760 + Psyr_4403 0.83 -1.3 5,265,761 - Psyr_4403 0.83 -0.7 5,265,761 - Psyr_4403 0.83 +0.1 5,265,761 - Psyr_4403 0.83 -0.5 5,265,761 - Psyr_4403 0.83 -1.7 5,265,863 - -0.8 5,265,962 - -1.8 5,265,962 - +0.9 5,265,962 - +0.7 5,266,148 + +0.8 5,266,300 + -0.4 5,266,331 + -0.1 5,266,331 + -0.4 5,266,331 + +0.9 5,266,331 + -0.1 5,266,333 + +2.3 5,266,333 + -0.1 5,266,333 + -0.3 5,266,333 + -0.6 5,266,333 + -0.5 5,266,333 + -0.3 5,266,333 + -0.6 5,266,333 + +0.3 5,266,333 + -0.2 5,266,333 + -0.2 5,266,333 + -0.1 5,266,333 + -0.5 5,266,333 + -0.1 5,266,333 + +0.9 5,266,333 + -0.3 5,266,333 + -1.6 5,266,333 + +0.7 5,266,333 + -0.3 5,266,333 + -0.6 5,266,333 + -0.7 5,266,333 + -0.6 5,266,333 + +1.1 5,266,333 + +0.0 5,266,333 + +0.8 5,266,333 + -0.2 5,266,333 + +0.7 5,266,333 + +0.6 5,266,716 + Psyr_4404 0.40 +0.7 5,266,716 + Psyr_4404 0.40 -0.5 5,266,844 + Psyr_4404 0.53 -0.5 5,266,862 + Psyr_4404 0.55 +0.8
Or see this region's nucleotide sequence