Experiment: KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0993 and Psyr_0994 are separated by 24 nucleotides Psyr_0994 and Psyr_0995 are separated by 256 nucleotides Psyr_0995 and Psyr_0996 are separated by 26 nucleotides
Psyr_0993: Psyr_0993 - transcriptional regulator, LuxR family, at 1,125,648 to 1,128,410
_0993
Psyr_0994: Psyr_0994 - Metal-dependent phosphohydrolase, HD subdomain protein, at 1,128,435 to 1,129,616
_0994
Psyr_0995: Psyr_0995 - Flavin reductase-like protein, at 1,129,873 to 1,130,409
_0995
Psyr_0996: Psyr_0996 - Alpha/beta hydrolase fold protein, at 1,130,436 to 1,131,215
_0996
Position (kb) 1128
1129
1130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.484 kb on + strand, within Psyr_0993 at 1127.484 kb on + strand, within Psyr_0993 at 1127.484 kb on + strand, within Psyr_0993 at 1127.485 kb on - strand, within Psyr_0993 at 1127.485 kb on - strand, within Psyr_0993 at 1127.485 kb on - strand, within Psyr_0993 at 1127.485 kb on - strand, within Psyr_0993 at 1127.594 kb on - strand, within Psyr_0993 at 1127.694 kb on + strand, within Psyr_0993 at 1127.694 kb on + strand, within Psyr_0993 at 1127.694 kb on + strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.697 kb on + strand, within Psyr_0993 at 1127.697 kb on + strand, within Psyr_0993 at 1127.697 kb on + strand, within Psyr_0993 at 1127.698 kb on - strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1128.462 kb on - strand at 1128.660 kb on + strand, within Psyr_0994 at 1128.660 kb on + strand, within Psyr_0994 at 1128.661 kb on - strand, within Psyr_0994 at 1128.661 kb on - strand, within Psyr_0994 at 1128.683 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.174 kb on + strand, within Psyr_0994 at 1129.174 kb on + strand, within Psyr_0994 at 1129.175 kb on - strand, within Psyr_0994 at 1129.175 kb on - strand, within Psyr_0994 at 1129.389 kb on - strand, within Psyr_0994 at 1129.389 kb on - strand, within Psyr_0994 at 1129.527 kb on + strand at 1129.571 kb on + strand at 1129.572 kb on - strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.637 kb on - strand at 1129.637 kb on - strand at 1129.671 kb on + strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.775 kb on - strand at 1129.801 kb on + strand at 1129.801 kb on + strand at 1129.801 kb on + strand at 1129.802 kb on - strand at 1129.802 kb on - strand at 1129.802 kb on - strand at 1129.802 kb on - strand at 1129.808 kb on + strand at 1129.908 kb on - strand at 1129.922 kb on + strand at 1129.923 kb on - strand at 1129.923 kb on - strand at 1129.923 kb on - strand at 1130.195 kb on + strand, within Psyr_0995 at 1130.196 kb on - strand, within Psyr_0995 at 1130.196 kb on - strand, within Psyr_0995 at 1130.218 kb on - strand, within Psyr_0995 at 1130.403 kb on + strand at 1130.403 kb on + strand at 1130.403 kb on + strand at 1130.404 kb on - strand at 1130.498 kb on + strand at 1130.498 kb on + strand at 1130.516 kb on - strand, within Psyr_0996
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM remove 1,127,475 + Psyr_0993 0.66 +1.3 1,127,475 + Psyr_0993 0.66 +0.2 1,127,475 + Psyr_0993 0.66 +0.2 1,127,476 - Psyr_0993 0.66 -0.5 1,127,476 - Psyr_0993 0.66 +0.6 1,127,476 - Psyr_0993 0.66 -0.4 1,127,484 + Psyr_0993 0.66 +1.6 1,127,484 + Psyr_0993 0.66 +0.5 1,127,484 + Psyr_0993 0.66 +0.6 1,127,485 - Psyr_0993 0.66 -1.1 1,127,485 - Psyr_0993 0.66 +0.3 1,127,485 - Psyr_0993 0.66 +0.5 1,127,485 - Psyr_0993 0.66 +1.0 1,127,594 - Psyr_0993 0.70 -2.1 1,127,694 + Psyr_0993 0.74 +0.9 1,127,694 + Psyr_0993 0.74 +0.3 1,127,694 + Psyr_0993 0.74 -3.4 1,127,695 - Psyr_0993 0.74 -1.4 1,127,695 - Psyr_0993 0.74 -0.0 1,127,695 - Psyr_0993 0.74 -1.2 1,127,695 - Psyr_0993 0.74 +0.2 1,127,695 - Psyr_0993 0.74 +2.5 1,127,697 + Psyr_0993 0.74 -0.5 1,127,697 + Psyr_0993 0.74 -0.6 1,127,697 + Psyr_0993 0.74 -1.1 1,127,698 - Psyr_0993 0.74 +0.4 1,127,794 - Psyr_0993 0.78 -0.5 1,127,794 - Psyr_0993 0.78 -0.2 1,128,462 - -0.5 1,128,660 + Psyr_0994 0.19 -1.8 1,128,660 + Psyr_0994 0.19 +0.6 1,128,661 - Psyr_0994 0.19 +0.2 1,128,661 - Psyr_0994 0.19 +0.3 1,128,683 + Psyr_0994 0.21 +0.4 1,128,811 + Psyr_0994 0.32 -1.3 1,128,811 + Psyr_0994 0.32 +0.1 1,128,811 + Psyr_0994 0.32 -0.4 1,128,811 + Psyr_0994 0.32 -0.4 1,128,811 + Psyr_0994 0.32 -2.0 1,128,812 - Psyr_0994 0.32 +1.5 1,128,812 - Psyr_0994 0.32 -1.4 1,128,812 - Psyr_0994 0.32 -0.2 1,128,812 - Psyr_0994 0.32 -0.4 1,129,168 + Psyr_0994 0.62 +0.7 1,129,168 + Psyr_0994 0.62 -1.6 1,129,168 + Psyr_0994 0.62 -0.4 1,129,168 + Psyr_0994 0.62 -0.2 1,129,168 + Psyr_0994 0.62 -0.5 1,129,168 + Psyr_0994 0.62 -0.0 1,129,168 + Psyr_0994 0.62 +1.8 1,129,168 + Psyr_0994 0.62 +0.5 1,129,168 + Psyr_0994 0.62 +0.4 1,129,168 + Psyr_0994 0.62 +0.1 1,129,168 + Psyr_0994 0.62 -0.2 1,129,168 + Psyr_0994 0.62 +0.0 1,129,168 + Psyr_0994 0.62 +0.4 1,129,168 + Psyr_0994 0.62 -0.4 1,129,168 + Psyr_0994 0.62 -1.0 1,129,168 + Psyr_0994 0.62 -0.1 1,129,169 - Psyr_0994 0.62 -1.1 1,129,169 - Psyr_0994 0.62 -0.1 1,129,169 - Psyr_0994 0.62 -0.9 1,129,169 - Psyr_0994 0.62 +1.5 1,129,169 - Psyr_0994 0.62 +0.3 1,129,169 - Psyr_0994 0.62 +0.3 1,129,169 - Psyr_0994 0.62 -1.0 1,129,169 - Psyr_0994 0.62 -0.3 1,129,174 + Psyr_0994 0.63 -0.3 1,129,174 + Psyr_0994 0.63 -0.7 1,129,175 - Psyr_0994 0.63 -0.0 1,129,175 - Psyr_0994 0.63 +0.2 1,129,389 - Psyr_0994 0.81 +0.1 1,129,389 - Psyr_0994 0.81 +0.8 1,129,527 + +1.8 1,129,571 + +1.0 1,129,572 - -0.1 1,129,573 + -0.4 1,129,573 + -2.0 1,129,573 + +0.2 1,129,573 + -0.2 1,129,573 + +0.1 1,129,573 + +2.3 1,129,573 + -0.3 1,129,573 + +1.2 1,129,573 + -0.0 1,129,573 + -1.3 1,129,573 + +1.4 1,129,573 + +0.1 1,129,573 + -1.5 1,129,573 + -0.7 1,129,573 + -0.8 1,129,573 + -0.3 1,129,573 + -0.0 1,129,573 + +1.4 1,129,573 + +0.3 1,129,573 + +0.1 1,129,573 + +0.3 1,129,573 + +1.3 1,129,573 + +0.3 1,129,573 + -0.5 1,129,573 + +2.0 1,129,573 + -1.1 1,129,573 + +0.1 1,129,573 + +0.9 1,129,573 + +0.9 1,129,573 + +0.3 1,129,573 + +0.0 1,129,573 + +0.3 1,129,573 + +0.4 1,129,573 + -1.0 1,129,573 + +0.1 1,129,574 - +0.1 1,129,574 - +0.8 1,129,574 - -0.1 1,129,574 - +0.6 1,129,574 - +0.0 1,129,574 - +0.2 1,129,574 - +0.1 1,129,574 - -2.1 1,129,574 - +0.0 1,129,574 - -0.6 1,129,574 - +0.6 1,129,574 - +0.5 1,129,574 - +0.3 1,129,574 - +1.5 1,129,574 - +1.2 1,129,574 - -0.5 1,129,574 - +0.9 1,129,574 - -0.1 1,129,574 - -0.1 1,129,574 - +0.6 1,129,574 - -1.3 1,129,574 - -0.7 1,129,574 - -1.6 1,129,574 - -0.6 1,129,574 - -0.9 1,129,574 - -0.5 1,129,574 - +0.6 1,129,574 - -0.8 1,129,574 - +0.4 1,129,574 - -0.2 1,129,637 - +0.3 1,129,637 - -0.1 1,129,671 + -1.7 1,129,672 - -0.5 1,129,672 - -0.7 1,129,672 - -0.4 1,129,775 - -1.0 1,129,801 + +0.7 1,129,801 + +0.4 1,129,801 + -1.4 1,129,802 - -0.5 1,129,802 - -0.0 1,129,802 - +0.4 1,129,802 - +0.9 1,129,808 + -0.8 1,129,908 - +0.3 1,129,922 + -0.1 1,129,923 - +0.7 1,129,923 - -0.0 1,129,923 - -0.1 1,130,195 + Psyr_0995 0.60 +0.0 1,130,196 - Psyr_0995 0.60 +0.3 1,130,196 - Psyr_0995 0.60 +0.8 1,130,218 - Psyr_0995 0.64 -0.8 1,130,403 + -0.1 1,130,403 + -0.4 1,130,403 + +0.4 1,130,404 - -0.5 1,130,498 + -0.1 1,130,498 + -0.6 1,130,516 - Psyr_0996 0.10 +0.6
Or see this region's nucleotide sequence