Strain Fitness in Escherichia coli BW25113 around b1609

Experiment: LB Anaerobic with Amoxicillin 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgC and rstA are separated by 128 nucleotidesrstA and rstB are separated by 3 nucleotidesrstB and tus are separated by 75 nucleotides b1607: ydgC - conserved inner membrane protein associated with alginate biosynthesis (NCBI), at 1,679,719 to 1,680,054 ydgC b1608: rstA - DNA-binding response regulator in two-component regulatory system with RstB (RefSeq), at 1,680,183 to 1,680,902 rstA b1609: rstB - sensory histidine kinase in two-component regulatory system with RstA (NCBI), at 1,680,906 to 1,682,207 rstB b1610: tus - DNA replication terminus site-binding protein (NCBI), at 1,682,283 to 1,683,212 tus Position (kb) 1680 1681 1682 1683Strain fitness (log2 ratio) -2 -1 0 1 2at 1679.924 kb on - strand, within ydgCat 1680.147 kb on + strandat 1680.268 kb on + strand, within rstAat 1680.438 kb on + strand, within rstAat 1680.439 kb on + strand, within rstAat 1680.439 kb on + strand, within rstAat 1680.544 kb on + strand, within rstAat 1680.552 kb on - strand, within rstAat 1680.552 kb on - strand, within rstAat 1680.575 kb on + strand, within rstAat 1680.981 kb on + strandat 1680.981 kb on + strandat 1681.080 kb on + strand, within rstBat 1681.099 kb on - strand, within rstBat 1681.176 kb on + strand, within rstBat 1681.555 kb on + strand, within rstBat 1681.555 kb on + strand, within rstBat 1681.779 kb on - strand, within rstBat 1681.779 kb on - strand, within rstBat 1681.827 kb on + strand, within rstBat 1682.011 kb on + strand, within rstBat 1682.068 kb on + strand, within rstBat 1682.068 kb on + strand, within rstBat 1682.090 kb on + strandat 1682.098 kb on - strandat 1682.100 kb on - strandat 1682.102 kb on + strandat 1682.102 kb on + strandat 1682.223 kb on + strandat 1682.223 kb on + strandat 1682.306 kb on - strandat 1682.451 kb on - strand, within tusat 1682.567 kb on - strand, within tusat 1682.620 kb on + strand, within tusat 1682.620 kb on + strand, within tusat 1682.820 kb on + strand, within tusat 1682.838 kb on + strand, within tusat 1682.878 kb on + strand, within tusat 1682.886 kb on - strand, within tusat 1682.941 kb on - strand, within tusat 1682.941 kb on - strand, within tusat 1683.046 kb on + strand, within tusat 1683.046 kb on + strand, within tusat 1683.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Amoxicillin 0.0000078125 mM
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1,679,924 - ydgC b1607 0.61 -1.7
1,680,147 + -0.7
1,680,268 + rstA b1608 0.12 +0.4
1,680,438 + rstA b1608 0.35 -0.3
1,680,439 + rstA b1608 0.36 -1.6
1,680,439 + rstA b1608 0.36 -0.3
1,680,544 + rstA b1608 0.50 +1.0
1,680,552 - rstA b1608 0.51 +0.3
1,680,552 - rstA b1608 0.51 -0.5
1,680,575 + rstA b1608 0.54 -0.3
1,680,981 + +1.6
1,680,981 + -0.8
1,681,080 + rstB b1609 0.13 +1.3
1,681,099 - rstB b1609 0.15 -2.1
1,681,176 + rstB b1609 0.21 -0.7
1,681,555 + rstB b1609 0.50 -1.8
1,681,555 + rstB b1609 0.50 -0.7
1,681,779 - rstB b1609 0.67 -0.3
1,681,779 - rstB b1609 0.67 -0.5
1,681,827 + rstB b1609 0.71 +0.1
1,682,011 + rstB b1609 0.85 +0.3
1,682,068 + rstB b1609 0.89 -1.1
1,682,068 + rstB b1609 0.89 -0.0
1,682,090 + +1.5
1,682,098 - +0.8
1,682,100 - +1.9
1,682,102 + -1.1
1,682,102 + +0.8
1,682,223 + -0.3
1,682,223 + +1.3
1,682,306 - -0.7
1,682,451 - tus b1610 0.18 -0.7
1,682,567 - tus b1610 0.31 -0.3
1,682,620 + tus b1610 0.36 +1.3
1,682,620 + tus b1610 0.36 -0.3
1,682,820 + tus b1610 0.58 -1.7
1,682,838 + tus b1610 0.60 -1.0
1,682,878 + tus b1610 0.64 -1.0
1,682,886 - tus b1610 0.65 -0.3
1,682,941 - tus b1610 0.71 -0.7
1,682,941 - tus b1610 0.71 -0.7
1,683,046 + tus b1610 0.82 +1.9
1,683,046 + tus b1610 0.82 +1.1
1,683,207 + -1.4

Or see this region's nucleotide sequence