Experiment: LB Anaerobic with Ticarcillin 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhD and ybhH are separated by 183 nucleotides ybhH and ybhI are separated by 75 nucleotides
b0768: ybhD - predicted DNA-binding transcriptional regulator (RefSeq), at 798,845 to 799,798
ybhD
b0769: ybhH - hypothetical protein (NCBI), at 799,982 to 801,034
ybhH
b0770: ybhI - predicted transporter (NCBI), at 801,110 to 802,543
ybhI
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 799.113 kb on - strand, within ybhD at 799.113 kb on - strand, within ybhD at 799.171 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.191 kb on + strand, within ybhD at 799.297 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.301 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.313 kb on - strand, within ybhD at 799.315 kb on + strand, within ybhD at 799.323 kb on - strand, within ybhD at 799.362 kb on - strand, within ybhD at 799.384 kb on + strand, within ybhD at 799.435 kb on + strand, within ybhD at 799.437 kb on + strand, within ybhD at 799.442 kb on - strand, within ybhD at 799.652 kb on + strand, within ybhD at 799.910 kb on - strand at 800.003 kb on - strand at 800.003 kb on - strand at 800.014 kb on - strand at 800.018 kb on + strand at 800.021 kb on - strand at 800.026 kb on - strand at 800.026 kb on - strand at 800.026 kb on - strand at 800.040 kb on - strand at 800.040 kb on - strand at 800.043 kb on - strand at 800.061 kb on + strand at 800.112 kb on - strand, within ybhH at 800.139 kb on + strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.151 kb on + strand, within ybhH at 800.159 kb on - strand, within ybhH at 800.170 kb on - strand, within ybhH at 800.175 kb on + strand, within ybhH at 800.203 kb on - strand, within ybhH at 800.207 kb on - strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.234 kb on - strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.257 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.345 kb on + strand, within ybhH at 800.360 kb on + strand, within ybhH at 800.379 kb on + strand, within ybhH at 800.407 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.437 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.451 kb on + strand, within ybhH at 800.454 kb on + strand, within ybhH at 800.513 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.543 kb on + strand, within ybhH at 800.548 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.556 kb on - strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.563 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.683 kb on + strand, within ybhH at 800.696 kb on + strand, within ybhH at 800.826 kb on - strand, within ybhH at 800.858 kb on - strand, within ybhH at 800.862 kb on - strand, within ybhH at 800.886 kb on + strand, within ybhH at 800.915 kb on - strand, within ybhH at 800.917 kb on + strand, within ybhH at 800.922 kb on + strand, within ybhH at 800.927 kb on - strand, within ybhH at 800.939 kb on + strand at 800.947 kb on + strand at 800.954 kb on + strand at 800.959 kb on + strand at 800.963 kb on + strand at 800.964 kb on + strand at 801.065 kb on + strand at 801.071 kb on - strand at 801.084 kb on - strand at 801.085 kb on - strand at 801.170 kb on - strand at 801.190 kb on + strand at 801.196 kb on - strand at 801.196 kb on - strand at 801.197 kb on + strand at 801.205 kb on - strand at 801.205 kb on - strand at 801.232 kb on - strand at 801.232 kb on - strand at 801.237 kb on + strand at 801.250 kb on - strand at 801.258 kb on - strand, within ybhI at 801.263 kb on - strand, within ybhI at 801.264 kb on - strand, within ybhI at 801.280 kb on + strand, within ybhI at 801.280 kb on + strand, within ybhI at 801.315 kb on + strand at 801.317 kb on + strand, within ybhI at 801.320 kb on - strand, within ybhI at 801.397 kb on + strand, within ybhI at 801.536 kb on - strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.546 kb on + strand, within ybhI at 801.546 kb on - strand, within ybhI at 801.546 kb on - strand, within ybhI at 801.596 kb on + strand, within ybhI at 801.630 kb on + strand, within ybhI at 801.644 kb on - strand, within ybhI at 801.663 kb on - strand, within ybhI at 801.765 kb on + strand, within ybhI at 801.767 kb on + strand, within ybhI at 801.771 kb on - strand, within ybhI at 801.794 kb on - strand, within ybhI at 801.806 kb on - strand, within ybhI at 801.873 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.961 kb on - strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.985 kb on - strand, within ybhI at 801.985 kb on - strand, within ybhI at 801.994 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Ticarcillin 0.000015625 mM remove 799,113 - ybhD b0768 0.28 -0.0 799,113 - ybhD b0768 0.28 -0.1 799,171 + ybhD b0768 0.34 -0.1 799,191 + ybhD b0768 0.36 -0.3 799,191 + ybhD b0768 0.36 +0.5 799,297 - ybhD b0768 0.47 -0.4 799,301 - ybhD b0768 0.48 +0.2 799,301 - ybhD b0768 0.48 -0.5 799,313 - ybhD b0768 0.49 -0.9 799,313 - ybhD b0768 0.49 -0.2 799,313 - ybhD b0768 0.49 -0.1 799,315 + ybhD b0768 0.49 -0.5 799,323 - ybhD b0768 0.50 -2.0 799,362 - ybhD b0768 0.54 +0.5 799,384 + ybhD b0768 0.56 +0.8 799,435 + ybhD b0768 0.62 +0.9 799,437 + ybhD b0768 0.62 -1.1 799,442 - ybhD b0768 0.63 +0.5 799,652 + ybhD b0768 0.85 +0.5 799,910 - +0.5 800,003 - -0.5 800,003 - -1.5 800,014 - +0.4 800,018 + +0.5 800,021 - -0.5 800,026 - -1.1 800,026 - +0.8 800,026 - -1.1 800,040 - -0.3 800,040 - -0.5 800,043 - +0.5 800,061 + +2.1 800,112 - ybhH b0769 0.12 -0.2 800,139 + ybhH b0769 0.15 -1.1 800,147 - ybhH b0769 0.16 -0.5 800,147 - ybhH b0769 0.16 -0.1 800,151 + ybhH b0769 0.16 +0.5 800,159 - ybhH b0769 0.17 +0.5 800,170 - ybhH b0769 0.18 -1.1 800,175 + ybhH b0769 0.18 +0.5 800,203 - ybhH b0769 0.21 +0.5 800,207 - ybhH b0769 0.21 -2.1 800,233 + ybhH b0769 0.24 -0.1 800,233 + ybhH b0769 0.24 -0.7 800,234 - ybhH b0769 0.24 +0.1 800,239 + ybhH b0769 0.24 -0.1 800,239 + ybhH b0769 0.24 -1.1 800,241 - ybhH b0769 0.25 +0.5 800,241 - ybhH b0769 0.25 -0.1 800,250 + ybhH b0769 0.25 -1.1 800,250 + ybhH b0769 0.25 +0.5 800,257 - ybhH b0769 0.26 +0.5 800,280 - ybhH b0769 0.28 -0.5 800,280 - ybhH b0769 0.28 -2.1 800,336 - ybhH b0769 0.34 -0.5 800,336 - ybhH b0769 0.34 +1.1 800,345 + ybhH b0769 0.34 -1.3 800,360 + ybhH b0769 0.36 -1.5 800,379 + ybhH b0769 0.38 -0.4 800,407 + ybhH b0769 0.40 -1.5 800,412 + ybhH b0769 0.41 -0.5 800,412 + ybhH b0769 0.41 -1.3 800,426 + ybhH b0769 0.42 -0.0 800,426 + ybhH b0769 0.42 -0.5 800,437 + ybhH b0769 0.43 +0.5 800,445 + ybhH b0769 0.44 -0.7 800,445 + ybhH b0769 0.44 +0.5 800,451 + ybhH b0769 0.45 -0.2 800,454 + ybhH b0769 0.45 +1.1 800,513 + ybhH b0769 0.50 +0.1 800,540 + ybhH b0769 0.53 -0.5 800,540 + ybhH b0769 0.53 -1.7 800,543 + ybhH b0769 0.53 -0.1 800,548 + ybhH b0769 0.54 +0.5 800,550 + ybhH b0769 0.54 -1.5 800,550 + ybhH b0769 0.54 -0.5 800,553 + ybhH b0769 0.54 +0.5 800,553 + ybhH b0769 0.54 -0.5 800,553 + ybhH b0769 0.54 -1.5 800,553 + ybhH b0769 0.54 -1.1 800,556 - ybhH b0769 0.55 +0.5 800,558 + ybhH b0769 0.55 +0.1 800,558 + ybhH b0769 0.55 +0.5 800,563 + ybhH b0769 0.55 +0.3 800,673 + ybhH b0769 0.66 +0.5 800,673 + ybhH b0769 0.66 -0.3 800,673 + ybhH b0769 0.66 -1.1 800,673 + ybhH b0769 0.66 -1.7 800,673 + ybhH b0769 0.66 -0.5 800,673 + ybhH b0769 0.66 -3.0 800,673 + ybhH b0769 0.66 -1.1 800,673 + ybhH b0769 0.66 -1.5 800,673 + ybhH b0769 0.66 +0.5 800,681 - ybhH b0769 0.66 +0.5 800,681 - ybhH b0769 0.66 +0.5 800,681 - ybhH b0769 0.66 +0.5 800,683 + ybhH b0769 0.67 -1.5 800,696 + ybhH b0769 0.68 -0.9 800,826 - ybhH b0769 0.80 +0.5 800,858 - ybhH b0769 0.83 +0.5 800,862 - ybhH b0769 0.84 +0.5 800,886 + ybhH b0769 0.86 -1.1 800,915 - ybhH b0769 0.89 +0.5 800,917 + ybhH b0769 0.89 +0.5 800,922 + ybhH b0769 0.89 -1.5 800,927 - ybhH b0769 0.90 +0.5 800,939 + +0.5 800,947 + +0.5 800,954 + +0.5 800,959 + +0.5 800,963 + -0.7 800,964 + +0.5 801,065 + +0.5 801,071 - +0.5 801,084 - +0.5 801,085 - +0.1 801,170 - -1.1 801,190 + -0.5 801,196 - -0.8 801,196 - -0.5 801,197 + -0.5 801,205 - -0.5 801,205 - +0.2 801,232 - +0.2 801,232 - +0.5 801,237 + +1.1 801,250 - -0.3 801,258 - ybhI b0770 0.10 +0.9 801,263 - ybhI b0770 0.11 -0.1 801,264 - ybhI b0770 0.11 -0.5 801,280 + ybhI b0770 0.12 +0.5 801,280 + ybhI b0770 0.12 -1.5 801,315 + +0.5 801,317 + ybhI b0770 0.14 +0.6 801,320 - ybhI b0770 0.15 +0.8 801,397 + ybhI b0770 0.20 -0.3 801,536 - ybhI b0770 0.30 -0.5 801,538 + ybhI b0770 0.30 -1.5 801,538 + ybhI b0770 0.30 +0.8 801,538 + ybhI b0770 0.30 +0.5 801,538 + ybhI b0770 0.30 +1.4 801,546 + ybhI b0770 0.30 -0.4 801,546 - ybhI b0770 0.30 -1.7 801,546 - ybhI b0770 0.30 -1.1 801,596 + ybhI b0770 0.34 -0.4 801,630 + ybhI b0770 0.36 -0.2 801,644 - ybhI b0770 0.37 -0.2 801,663 - ybhI b0770 0.39 +0.5 801,765 + ybhI b0770 0.46 -0.1 801,767 + ybhI b0770 0.46 -1.2 801,771 - ybhI b0770 0.46 +0.4 801,794 - ybhI b0770 0.48 -2.5 801,806 - ybhI b0770 0.49 -0.1 801,873 + ybhI b0770 0.53 +0.8 801,893 + ybhI b0770 0.55 +0.2 801,893 + ybhI b0770 0.55 +0.3 801,961 - ybhI b0770 0.59 +0.5 801,976 + ybhI b0770 0.60 +0.2 801,976 + ybhI b0770 0.60 -0.3 801,985 - ybhI b0770 0.61 -1.8 801,985 - ybhI b0770 0.61 +0.5 801,994 + ybhI b0770 0.62 -0.5 802,026 + ybhI b0770 0.64 -0.8 802,026 + ybhI b0770 0.64 +0.1
Or see this region's nucleotide sequence