Strain Fitness in Escherichia coli BW25113 around b1069

Experiment: LB Anaerobic with Ticarcillin 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmviM and mviN are separated by 109 nucleotidesmviN and flgN are separated by 39 nucleotidesflgN and flgM are separated by 4 nucleotidesflgM and flgA are separated by 75 nucleotides b1068: mviM - predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI), at 1,126,029 to 1,126,952 mviM b1069: mviN - predicted inner membrane protein (NCBI), at 1,127,062 to 1,128,597 mviN b1070: flgN - export chaperone for FlgK and FlgL (NCBI), at 1,128,637 to 1,129,053 flgN b1071: flgM - anti-sigma factor for FliA (sigma 28) (NCBI), at 1,129,058 to 1,129,351 flgM b1072: flgA - flagellar basal body P-ring biosynthesis protein A (NCBI), at 1,129,427 to 1,130,086 flgA Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -2 -1 0 1 2at 1126.116 kb on + strandat 1126.190 kb on - strand, within mviMat 1126.238 kb on + strand, within mviMat 1126.238 kb on + strand, within mviMat 1126.248 kb on + strand, within mviMat 1126.277 kb on + strand, within mviMat 1126.341 kb on - strand, within mviMat 1126.341 kb on - strand, within mviMat 1126.341 kb on - strand, within mviMat 1126.409 kb on + strand, within mviMat 1126.409 kb on + strand, within mviMat 1126.409 kb on + strand, within mviMat 1126.409 kb on + strand, within mviMat 1126.417 kb on - strand, within mviMat 1126.417 kb on - strand, within mviMat 1126.417 kb on - strand, within mviMat 1126.418 kb on - strand, within mviMat 1126.418 kb on - strand, within mviMat 1126.461 kb on + strand, within mviMat 1126.478 kb on - strand, within mviMat 1126.478 kb on - strand, within mviMat 1126.495 kb on + strand, within mviMat 1126.509 kb on + strand, within mviMat 1126.595 kb on - strand, within mviMat 1126.668 kb on - strand, within mviMat 1126.730 kb on - strand, within mviMat 1126.730 kb on - strand, within mviMat 1126.766 kb on + strand, within mviMat 1126.777 kb on - strand, within mviMat 1126.815 kb on - strand, within mviMat 1126.925 kb on + strandat 1126.925 kb on + strandat 1126.926 kb on + strandat 1126.956 kb on + strandat 1128.553 kb on + strandat 1128.592 kb on + strandat 1128.600 kb on - strandat 1128.612 kb on + strandat 1128.932 kb on - strand, within flgNat 1129.057 kb on + strandat 1129.094 kb on - strand, within flgMat 1129.303 kb on + strand, within flgMat 1129.414 kb on - strandat 1129.433 kb on - strandat 1129.433 kb on - strandat 1129.579 kb on + strand, within flgA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Ticarcillin 0.00003125 mM
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1,126,116 + +0.3
1,126,190 - mviM b1068 0.17 -1.9
1,126,238 + mviM b1068 0.23 -1.9
1,126,238 + mviM b1068 0.23 -1.3
1,126,248 + mviM b1068 0.24 +0.1
1,126,277 + mviM b1068 0.27 +0.5
1,126,341 - mviM b1068 0.34 -0.6
1,126,341 - mviM b1068 0.34 +1.2
1,126,341 - mviM b1068 0.34 -1.9
1,126,409 + mviM b1068 0.41 -0.1
1,126,409 + mviM b1068 0.41 +1.1
1,126,409 + mviM b1068 0.41 -0.3
1,126,409 + mviM b1068 0.41 -0.8
1,126,417 - mviM b1068 0.42 -0.5
1,126,417 - mviM b1068 0.42 -0.1
1,126,417 - mviM b1068 0.42 +1.3
1,126,418 - mviM b1068 0.42 +0.0
1,126,418 - mviM b1068 0.42 -0.0
1,126,461 + mviM b1068 0.47 +0.3
1,126,478 - mviM b1068 0.49 +0.1
1,126,478 - mviM b1068 0.49 +0.5
1,126,495 + mviM b1068 0.50 +0.6
1,126,509 + mviM b1068 0.52 +0.9
1,126,595 - mviM b1068 0.61 +0.1
1,126,668 - mviM b1068 0.69 -2.1
1,126,730 - mviM b1068 0.76 +0.5
1,126,730 - mviM b1068 0.76 -1.4
1,126,766 + mviM b1068 0.80 -0.8
1,126,777 - mviM b1068 0.81 -2.1
1,126,815 - mviM b1068 0.85 +0.8
1,126,925 + +0.3
1,126,925 + +0.3
1,126,926 + -0.0
1,126,956 + -0.5
1,128,553 + -0.2
1,128,592 + -0.1
1,128,600 - +1.2
1,128,612 + -0.9
1,128,932 - flgN b1070 0.71 +0.4
1,129,057 + -0.4
1,129,094 - flgM b1071 0.12 +0.0
1,129,303 + flgM b1071 0.83 +1.9
1,129,414 - -0.8
1,129,433 - -0.1
1,129,433 - -0.9
1,129,579 + flgA b1072 0.23 -0.3

Or see this region's nucleotide sequence