Strain Fitness in Escherichia coli BW25113 around b2139

Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Cephalothin 0.0000078125 mM
2,224,348	-				-1.3
2,224,358	+				+0.7
2,224,417	-				+1.1
2,224,529	-				-0.2
2,224,541	-				+1.8
2,224,578	+				+0.5
2,224,713	-	yohF	b2137	0.24	-0.2
2,224,872	-	yohF	b2137	0.45	-0.2
2,224,902	+	yohF	b2137	0.49	-1.7
2,224,902	+	yohF	b2137	0.49	+0.2
2,224,942	+	yohF	b2137	0.54	+1.3
2,224,992	-	yohF	b2137	0.60	-1.1
2,224,992	-	yohF	b2137	0.60	-1.4
2,224,994	-	yohF	b2137	0.61	-0.0
2,224,994	-	yohF	b2137	0.61	+0.7
2,225,063	-	yohF	b2137	0.70	+0.5
2,225,103	-	yohF	b2137	0.75	-2.8
2,225,133	+	yohF	b2137	0.79	+0.7
2,225,163	+	yohF	b2137	0.83	-0.2
2,225,199	-	yohF	b2137	0.88	-1.4
2,225,292	-				+1.2
2,225,409	+				+1.2
2,225,429	-				+0.3
2,225,476	-				+0.2
2,225,538	+	mdtQ	b2139	0.13	+0.8
2,225,672	-	mdtQ	b2139	0.23	-0.3
2,225,711	+	mdtQ	b2139	0.25	-2.4
2,225,719	-	mdtQ	b2139	0.26	+0.4
2,225,756	-	mdtQ	b2139	0.29	+2.7
2,225,756	-	mdtQ	b2139	0.29	+0.1
2,225,777	+	mdtQ	b2139	0.30	-1.3
2,225,795	+	mdtQ	b2139	0.31	+0.5
2,225,795	+	mdtQ	b2139	0.31	+0.7
2,225,843	+	mdtQ	b2139	0.35	-1.4
2,225,862	+	mdtQ	b2139	0.36	-0.7
2,225,862	+	mdtQ	b2139	0.36	-0.1
2,225,867	-	mdtQ	b2139	0.36	-2.5
2,225,899	+	mdtQ	b2139	0.39	+0.5
2,225,899	+	mdtQ	b2139	0.39	+1.9
2,225,906	+	mdtQ	b2139	0.39	-1.6
2,225,917	-	mdtQ	b2139	0.40	+1.5
2,225,964	-	mdtQ	b2139	0.43	+1.3
2,225,964	-	mdtQ	b2139	0.43	+0.5
2,225,970	+	mdtQ	b2139	0.44	+0.7
2,226,046	-	mdtQ	b2139	0.49	+0.5
2,226,046	-	mdtQ	b2139	0.49	+0.6
2,226,097	+	mdtQ	b2139	0.52	-0.1
2,226,097	+	mdtQ	b2139	0.52	-1.5
2,226,118	+	mdtQ	b2139	0.54	-0.6
2,226,126	-	mdtQ	b2139	0.54	+1.0
2,226,295	-	mdtQ	b2139	0.66	+0.5
2,226,310	+	mdtQ	b2139	0.67	+1.8
2,226,368	+	mdtQ	b2139	0.71	+0.1
2,226,378	-	mdtQ	b2139	0.72	+0.5
2,226,398	-	mdtQ	b2139	0.73	+0.4
2,226,528	+	mdtQ	b2139	0.82	-0.3
2,226,528	+	mdtQ	b2139	0.82	+1.7
2,226,668	-				-0.7
2,226,721	+				-0.3
2,226,738	+				+1.0
2,226,753	+				-0.1
2,226,753	+				-0.6
2,226,782	+				+0.7
2,226,782	+				-0.3
2,226,794	+				+0.3
2,226,903	+				-0.4
2,226,934	+				-1.3
2,226,934	+				+2.7
2,226,942	-				+0.7
2,227,010	+				-0.6
2,227,020	+	yohP	b4679	0.19	-0.3
2,227,020	+	yohP	b4679	0.19	-0.3
2,227,047	+	yohP	b4679	0.51	+2.3
2,227,047	+	yohP	b4679	0.51	+2.7
2,227,050	+	yohP	b4679	0.55	-0.2
2,227,051	+	yohP	b4679	0.56	+0.7
2,227,052	+	yohP	b4679	0.57	-1.9
2,227,052	+	yohP	b4679	0.57	+1.3
2,227,052	+	yohP	b4679	0.57	+1.5
2,227,126	+				+0.7
2,227,158	-				+0.7
2,227,158	-				+1.7
2,227,163	-				+0.4
2,227,167	+				-0.5
2,227,168	-				+0.7
2,227,175	-				-0.3
2,227,179	-				+0.7
2,227,179	-				+0.7
2,227,336	+				-0.3
2,227,336	+				-0.2
2,227,345	+				-1.6
2,227,355	+				-0.3
2,227,432	+				+0.7
2,227,592	-	dusC	b2140	0.14	-1.3
2,227,617	-	dusC	b2140	0.17	+0.4
2,227,620	-	dusC	b2140	0.17	-1.0
2,227,620	-	dusC	b2140	0.17	+0.0
2,227,663	+	dusC	b2140	0.21	+0.7
2,227,663	+	dusC	b2140	0.21	+0.7
2,227,671	-	dusC	b2140	0.22	-0.0
2,227,671	-	dusC	b2140	0.22	+0.1
2,227,671	-	dusC	b2140	0.22	-0.1
2,227,671	-	dusC	b2140	0.22	+0.8
2,227,671	-	dusC	b2140	0.22	+0.7
2,227,674	+	dusC	b2140	0.23	+0.7
2,227,675	-	dusC	b2140	0.23	+0.1
2,227,676	-	dusC	b2140	0.23	-1.5
2,227,747	-	dusC	b2140	0.30	-0.9
2,227,752	-	dusC	b2140	0.31	-2.1
2,227,752	-	dusC	b2140	0.31	-1.3
2,227,767	+	dusC	b2140	0.32	-0.9
2,227,767	+	dusC	b2140	0.32	+0.7