Experiment: KB with Strychnine Sulfate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4381 and Psyr_4382 are separated by 255 nucleotides Psyr_4382 and Psyr_4383 are separated by 80 nucleotides Psyr_4383 and Psyr_4384 overlap by 7 nucleotides
Psyr_4381: Psyr_4381 - arginine decarboxylase, at 5,236,745 to 5,238,658
_4381
Psyr_4382: Psyr_4382 - Uncharacterized protein conserved in bacteria-like protein, at 5,238,914 to 5,240,023
_4382
Psyr_4383: Psyr_4383 - esterase/lipase/thioesterase family protein, at 5,240,104 to 5,241,006
_4383
Psyr_4384: Psyr_4384 - Multi antimicrobial extrusion protein MatE, at 5,241,000 to 5,242,340
_4384
Position (kb) 5238
5239
5240
5241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5237.945 kb on + strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.063 kb on - strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.293 kb on + strand, within Psyr_4381 at 5238.293 kb on + strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.356 kb on + strand, within Psyr_4381 at 5238.357 kb on - strand, within Psyr_4381 at 5238.446 kb on + strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.518 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.644 kb on + strand at 5238.645 kb on - strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.783 kb on + strand at 5238.783 kb on + strand at 5238.784 kb on - strand at 5238.784 kb on - strand at 5238.784 kb on - strand at 5238.784 kb on - strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.824 kb on + strand at 5238.825 kb on - strand at 5238.841 kb on + strand at 5238.842 kb on - strand at 5238.985 kb on - strand at 5239.019 kb on + strand at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.169 kb on + strand, within Psyr_4382 at 5239.191 kb on - strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.247 kb on - strand, within Psyr_4382 at 5239.247 kb on - strand, within Psyr_4382 at 5239.247 kb on - strand, within Psyr_4382 at 5239.367 kb on + strand, within Psyr_4382 at 5239.424 kb on + strand, within Psyr_4382 at 5240.026 kb on + strand at 5240.027 kb on - strand at 5240.027 kb on - strand at 5240.027 kb on - strand at 5240.027 kb on - strand at 5240.082 kb on + strand at 5240.083 kb on - strand at 5240.145 kb on - strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.221 kb on + strand, within Psyr_4383 at 5240.221 kb on + strand, within Psyr_4383 at 5240.221 kb on + strand, within Psyr_4383 at 5240.221 kb on + strand, within Psyr_4383 at 5240.221 kb on + strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.250 kb on + strand, within Psyr_4383 at 5240.250 kb on + strand, within Psyr_4383 at 5240.250 kb on + strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.266 kb on + strand, within Psyr_4383 at 5240.266 kb on + strand, within Psyr_4383 at 5240.267 kb on - strand, within Psyr_4383 at 5240.267 kb on - strand, within Psyr_4383 at 5240.267 kb on - strand, within Psyr_4383 at 5240.315 kb on - strand, within Psyr_4383 at 5240.407 kb on + strand, within Psyr_4383 at 5240.407 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.494 kb on + strand, within Psyr_4383 at 5240.518 kb on + strand, within Psyr_4383 at 5240.518 kb on + strand, within Psyr_4383 at 5240.518 kb on + strand, within Psyr_4383 at 5240.518 kb on + strand, within Psyr_4383 at 5240.519 kb on - strand, within Psyr_4383 at 5240.519 kb on - strand, within Psyr_4383 at 5240.519 kb on - strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.546 kb on - strand, within Psyr_4383 at 5240.641 kb on + strand, within Psyr_4383 at 5240.641 kb on + strand, within Psyr_4383 at 5240.641 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.855 kb on - strand, within Psyr_4383
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM remove 5,237,945 + Psyr_4381 0.63 +0.4 5,237,945 + Psyr_4381 0.63 -1.0 5,237,963 + Psyr_4381 0.64 -0.1 5,237,963 + Psyr_4381 0.64 +0.9 5,237,963 + Psyr_4381 0.64 +0.5 5,237,963 + Psyr_4381 0.64 -0.1 5,237,963 + Psyr_4381 0.64 +1.5 5,237,963 + Psyr_4381 0.64 +0.3 5,237,963 + Psyr_4381 0.64 -1.8 5,237,963 + Psyr_4381 0.64 -0.2 5,237,963 + Psyr_4381 0.64 -1.1 5,237,964 - Psyr_4381 0.64 +0.3 5,237,964 - Psyr_4381 0.64 +0.0 5,237,964 - Psyr_4381 0.64 +3.6 5,237,964 - Psyr_4381 0.64 -0.9 5,238,038 + Psyr_4381 0.68 -1.2 5,238,038 + Psyr_4381 0.68 -0.5 5,238,038 + Psyr_4381 0.68 +0.4 5,238,038 + Psyr_4381 0.68 +0.1 5,238,039 - Psyr_4381 0.68 -0.1 5,238,062 + Psyr_4381 0.69 +0.8 5,238,063 - Psyr_4381 0.69 -0.7 5,238,137 + Psyr_4381 0.73 +0.1 5,238,137 + Psyr_4381 0.73 +0.2 5,238,137 + Psyr_4381 0.73 -1.7 5,238,137 + Psyr_4381 0.73 -0.1 5,238,137 + Psyr_4381 0.73 -0.5 5,238,137 + Psyr_4381 0.73 -0.7 5,238,137 + Psyr_4381 0.73 -0.0 5,238,137 + Psyr_4381 0.73 -0.5 5,238,137 + Psyr_4381 0.73 +0.1 5,238,137 + Psyr_4381 0.73 -0.8 5,238,138 - Psyr_4381 0.73 +0.0 5,238,138 - Psyr_4381 0.73 +0.4 5,238,138 - Psyr_4381 0.73 +1.7 5,238,138 - Psyr_4381 0.73 -0.4 5,238,138 - Psyr_4381 0.73 -0.5 5,238,138 - Psyr_4381 0.73 +0.3 5,238,138 - Psyr_4381 0.73 +1.3 5,238,138 - Psyr_4381 0.73 +0.5 5,238,138 - Psyr_4381 0.73 +2.5 5,238,138 - Psyr_4381 0.73 -0.6 5,238,138 - Psyr_4381 0.73 -0.3 5,238,138 - Psyr_4381 0.73 -0.9 5,238,138 - Psyr_4381 0.73 -0.3 5,238,138 - Psyr_4381 0.73 +0.3 5,238,138 - Psyr_4381 0.73 +0.1 5,238,293 + Psyr_4381 0.81 +0.5 5,238,293 + Psyr_4381 0.81 -0.3 5,238,294 - Psyr_4381 0.81 -0.0 5,238,294 - Psyr_4381 0.81 -0.0 5,238,356 + Psyr_4381 0.84 +0.1 5,238,357 - Psyr_4381 0.84 -1.2 5,238,446 + Psyr_4381 0.89 -0.2 5,238,447 - Psyr_4381 0.89 +0.3 5,238,518 + +0.8 5,238,602 + +1.3 5,238,602 + +0.3 5,238,602 + +0.7 5,238,603 - -0.5 5,238,603 - -0.6 5,238,603 - -0.1 5,238,603 - +0.3 5,238,603 - -1.2 5,238,603 - +0.2 5,238,644 + -0.9 5,238,645 - +0.7 5,238,679 + +0.3 5,238,679 + +0.3 5,238,679 + +0.8 5,238,679 + -1.3 5,238,679 + -0.0 5,238,680 - +0.5 5,238,680 - -1.5 5,238,783 + -0.7 5,238,783 + -0.8 5,238,784 - -0.1 5,238,784 - +0.5 5,238,784 - +1.5 5,238,784 - -0.2 5,238,801 + -0.3 5,238,801 + -0.4 5,238,801 + -0.2 5,238,802 - +0.2 5,238,802 - -0.3 5,238,802 - -0.5 5,238,802 - +0.8 5,238,824 + -1.4 5,238,825 - -1.2 5,238,841 + -0.6 5,238,842 - +0.5 5,238,985 - +0.2 5,239,019 + +0.1 5,239,079 + Psyr_4382 0.15 -0.3 5,239,079 + Psyr_4382 0.15 -0.4 5,239,079 + Psyr_4382 0.15 -0.5 5,239,080 - Psyr_4382 0.15 -0.8 5,239,080 - Psyr_4382 0.15 -0.1 5,239,080 - Psyr_4382 0.15 +0.8 5,239,080 - Psyr_4382 0.15 +0.3 5,239,080 - Psyr_4382 0.15 +0.7 5,239,080 - Psyr_4382 0.15 +0.3 5,239,080 - Psyr_4382 0.15 -0.0 5,239,169 + Psyr_4382 0.23 -0.4 5,239,191 - Psyr_4382 0.25 -0.1 5,239,246 + Psyr_4382 0.30 -0.0 5,239,246 + Psyr_4382 0.30 +0.1 5,239,247 - Psyr_4382 0.30 +1.0 5,239,247 - Psyr_4382 0.30 -0.3 5,239,247 - Psyr_4382 0.30 -1.4 5,239,367 + Psyr_4382 0.41 +0.7 5,239,424 + Psyr_4382 0.46 -0.7 5,240,026 + +0.7 5,240,027 - -0.0 5,240,027 - -0.2 5,240,027 - +0.9 5,240,027 - -0.5 5,240,082 + -0.9 5,240,083 - +0.6 5,240,145 - +0.0 5,240,187 + +0.2 5,240,187 + +0.0 5,240,187 + +0.2 5,240,187 + +0.5 5,240,188 - -0.3 5,240,188 - +0.6 5,240,188 - +0.1 5,240,188 - +1.9 5,240,188 - -0.1 5,240,188 - -1.6 5,240,188 - +0.2 5,240,188 - -1.8 5,240,221 + Psyr_4383 0.13 -0.1 5,240,221 + Psyr_4383 0.13 +1.7 5,240,221 + Psyr_4383 0.13 -0.4 5,240,221 + Psyr_4383 0.13 +0.5 5,240,221 + Psyr_4383 0.13 -0.5 5,240,222 - Psyr_4383 0.13 +0.3 5,240,250 + Psyr_4383 0.16 -0.7 5,240,250 + Psyr_4383 0.16 +0.1 5,240,250 + Psyr_4383 0.16 +0.8 5,240,251 - Psyr_4383 0.16 -0.1 5,240,251 - Psyr_4383 0.16 +1.1 5,240,251 - Psyr_4383 0.16 +0.3 5,240,251 - Psyr_4383 0.16 +0.4 5,240,251 - Psyr_4383 0.16 +0.7 5,240,254 - Psyr_4383 0.17 +0.8 5,240,266 + Psyr_4383 0.18 +0.3 5,240,266 + Psyr_4383 0.18 +0.2 5,240,267 - Psyr_4383 0.18 +0.7 5,240,267 - Psyr_4383 0.18 +0.4 5,240,267 - Psyr_4383 0.18 -0.8 5,240,315 - Psyr_4383 0.23 +0.2 5,240,407 + Psyr_4383 0.34 +0.7 5,240,407 + Psyr_4383 0.34 -0.9 5,240,426 + Psyr_4383 0.36 -0.2 5,240,426 + Psyr_4383 0.36 -1.2 5,240,426 + Psyr_4383 0.36 -0.4 5,240,426 + Psyr_4383 0.36 +1.3 5,240,426 + Psyr_4383 0.36 +0.6 5,240,426 + Psyr_4383 0.36 -0.7 5,240,427 - Psyr_4383 0.36 -0.2 5,240,427 - Psyr_4383 0.36 +0.6 5,240,427 - Psyr_4383 0.36 -0.2 5,240,427 - Psyr_4383 0.36 +0.0 5,240,427 - Psyr_4383 0.36 +0.3 5,240,427 - Psyr_4383 0.36 -0.4 5,240,427 - Psyr_4383 0.36 -0.5 5,240,427 - Psyr_4383 0.36 -0.2 5,240,427 - Psyr_4383 0.36 -1.0 5,240,494 + Psyr_4383 0.43 -0.5 5,240,518 + Psyr_4383 0.46 -0.2 5,240,518 + Psyr_4383 0.46 +0.2 5,240,518 + Psyr_4383 0.46 -0.0 5,240,518 + Psyr_4383 0.46 +0.4 5,240,519 - Psyr_4383 0.46 -0.3 5,240,519 - Psyr_4383 0.46 +1.0 5,240,519 - Psyr_4383 0.46 +1.8 5,240,545 + Psyr_4383 0.49 -0.7 5,240,545 + Psyr_4383 0.49 +0.7 5,240,545 + Psyr_4383 0.49 +0.6 5,240,545 + Psyr_4383 0.49 -0.2 5,240,546 - Psyr_4383 0.49 -0.9 5,240,641 + Psyr_4383 0.59 -0.5 5,240,641 + Psyr_4383 0.59 +0.3 5,240,641 + Psyr_4383 0.59 -0.7 5,240,854 + Psyr_4383 0.83 +0.4 5,240,854 + Psyr_4383 0.83 -0.4 5,240,854 + Psyr_4383 0.83 -3.2 5,240,854 + Psyr_4383 0.83 +0.2 5,240,854 + Psyr_4383 0.83 +1.3 5,240,855 - Psyr_4383 0.83 +0.2
Or see this region's nucleotide sequence