Experiment: KB with Strychnine Sulfate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3423 and Psyr_3424 are separated by 14 nucleotides Psyr_3424 and Psyr_3425 are separated by 152 nucleotides Psyr_3425 and Psyr_3426 are separated by 61 nucleotides
Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835
_3423
Psyr_3424: Psyr_3424 - conserved hypothetical protein, at 4,088,850 to 4,089,317
_3424
Psyr_3425: Psyr_3425 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 4,089,470 to 4,090,204
_3425
Psyr_3426: Psyr_3426 - adenine phosphoribosyltransferase, at 4,090,266 to 4,090,814
_3426
Position (kb) 4089
4090
4091 Strain fitness (log2 ratio) -2
-1
0
1 at 4088.656 kb on + strand, within Psyr_3423 at 4088.656 kb on + strand, within Psyr_3423 at 4088.656 kb on + strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.788 kb on + strand at 4088.788 kb on + strand at 4088.851 kb on + strand at 4088.852 kb on - strand at 4088.966 kb on + strand, within Psyr_3424 at 4089.248 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.284 kb on + strand at 4089.348 kb on - strand at 4089.348 kb on - strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.441 kb on - strand at 4089.464 kb on + strand at 4089.465 kb on - strand at 4089.465 kb on - strand at 4089.465 kb on - strand at 4089.560 kb on - strand, within Psyr_3425 at 4090.096 kb on - strand, within Psyr_3425 at 4090.096 kb on - strand, within Psyr_3425 at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.147 kb on - strand at 4090.147 kb on - strand at 4090.147 kb on - strand at 4090.410 kb on + strand, within Psyr_3426 at 4090.410 kb on + strand, within Psyr_3426 at 4090.540 kb on + strand, within Psyr_3426 at 4090.540 kb on + strand, within Psyr_3426 at 4090.541 kb on - strand, within Psyr_3426 at 4090.578 kb on + strand, within Psyr_3426 at 4090.704 kb on + strand, within Psyr_3426 at 4090.705 kb on - strand, within Psyr_3426 at 4090.758 kb on - strand, within Psyr_3426 at 4090.833 kb on + strand at 4090.833 kb on + strand at 4090.833 kb on + strand at 4090.834 kb on - strand at 4090.834 kb on - strand at 4090.869 kb on + strand at 4090.870 kb on - strand at 4090.870 kb on - strand at 4090.918 kb on - strand at 4091.079 kb on - strand at 4091.079 kb on - strand at 4091.097 kb on + strand at 4091.098 kb on - strand at 4091.143 kb on - strand at 4091.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM remove 4,088,656 + Psyr_3423 0.87 +1.2 4,088,656 + Psyr_3423 0.87 -1.3 4,088,656 + Psyr_3423 0.87 +0.7 4,088,657 - Psyr_3423 0.87 -0.3 4,088,657 - Psyr_3423 0.87 +0.0 4,088,657 - Psyr_3423 0.87 +0.6 4,088,788 + +0.8 4,088,788 + -0.6 4,088,851 + -0.3 4,088,852 - -1.2 4,088,966 + Psyr_3424 0.25 -0.8 4,089,248 + Psyr_3424 0.85 -0.6 4,089,253 + Psyr_3424 0.86 +0.1 4,089,253 + Psyr_3424 0.86 -1.0 4,089,253 + Psyr_3424 0.86 -0.6 4,089,253 + Psyr_3424 0.86 -1.0 4,089,254 - Psyr_3424 0.86 +0.1 4,089,254 - Psyr_3424 0.86 -0.8 4,089,254 - Psyr_3424 0.86 -0.4 4,089,254 - Psyr_3424 0.86 -1.6 4,089,254 - Psyr_3424 0.86 +0.7 4,089,254 - Psyr_3424 0.86 -0.2 4,089,254 - Psyr_3424 0.86 +0.0 4,089,254 - Psyr_3424 0.86 +0.8 4,089,284 + +0.7 4,089,348 - -2.1 4,089,348 - -1.8 4,089,440 + -2.1 4,089,440 + -1.3 4,089,440 + -0.2 4,089,440 + +1.0 4,089,440 + -0.8 4,089,440 + -0.4 4,089,441 - +0.4 4,089,464 + +0.0 4,089,465 - +0.0 4,089,465 - -1.0 4,089,465 - -0.1 4,089,560 - Psyr_3425 0.12 -0.6 4,090,096 - Psyr_3425 0.85 +1.0 4,090,096 - Psyr_3425 0.85 -1.6 4,090,146 + -1.6 4,090,146 + +0.4 4,090,146 + -0.3 4,090,146 + +0.6 4,090,146 + -2.4 4,090,146 + -2.0 4,090,146 + +0.2 4,090,147 - +0.0 4,090,147 - +0.8 4,090,147 - -0.6 4,090,410 + Psyr_3426 0.26 -1.9 4,090,410 + Psyr_3426 0.26 -0.1 4,090,540 + Psyr_3426 0.50 +0.3 4,090,540 + Psyr_3426 0.50 -1.2 4,090,541 - Psyr_3426 0.50 +0.3 4,090,578 + Psyr_3426 0.57 +1.4 4,090,704 + Psyr_3426 0.80 +0.5 4,090,705 - Psyr_3426 0.80 -0.6 4,090,758 - Psyr_3426 0.90 -0.9 4,090,833 + +0.4 4,090,833 + +1.0 4,090,833 + +0.5 4,090,834 - +0.0 4,090,834 - +0.2 4,090,869 + +0.2 4,090,870 - -0.1 4,090,870 - -0.4 4,090,918 - -1.0 4,091,079 - +0.3 4,091,079 - +0.1 4,091,097 + +0.6 4,091,098 - +0.3 4,091,143 - +0.2 4,091,143 - -0.7
Or see this region's nucleotide sequence