Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0997

Experiment: KB with Strychnine Sulfate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0995 and Psyr_0996 are separated by 26 nucleotidesPsyr_0996 and Psyr_0997 are separated by 41 nucleotidesPsyr_0997 and Psyr_0998 are separated by 10 nucleotidesPsyr_0998 and Psyr_0999 overlap by 1 nucleotides Psyr_0995: Psyr_0995 - Flavin reductase-like protein, at 1,129,873 to 1,130,409 _0995 Psyr_0996: Psyr_0996 - Alpha/beta hydrolase fold protein, at 1,130,436 to 1,131,215 _0996 Psyr_0997: Psyr_0997 - Endoribonuclease L-PSP, at 1,131,257 to 1,131,640 _0997 Psyr_0998: Psyr_0998 - Isochorismatase hydrolase, at 1,131,651 to 1,132,388 _0998 Psyr_0999: Psyr_0999 - luciferase, at 1,132,388 to 1,133,470 _0999 Position (kb) 1131 1132Strain fitness (log2 ratio) -2 -1 0 1at 1130.403 kb on + strandat 1130.403 kb on + strandat 1130.403 kb on + strandat 1130.404 kb on - strandat 1130.498 kb on + strandat 1130.498 kb on + strandat 1130.516 kb on - strand, within Psyr_0996at 1130.793 kb on + strand, within Psyr_0996at 1130.793 kb on + strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.797 kb on + strand, within Psyr_0996at 1130.797 kb on + strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1131.083 kb on - strand, within Psyr_0996at 1131.083 kb on - strand, within Psyr_0996at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.512 kb on + strand, within Psyr_0997at 1131.512 kb on + strand, within Psyr_0997at 1131.513 kb on - strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.802 kb on + strand, within Psyr_0998at 1131.802 kb on + strand, within Psyr_0998at 1131.802 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.106 kb on - strand, within Psyr_0998at 1132.636 kb on + strand, within Psyr_0999

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM
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1,130,403 + -0.1
1,130,403 + -0.7
1,130,403 + +0.3
1,130,404 - +0.1
1,130,498 + +0.5
1,130,498 + -2.1
1,130,516 - Psyr_0996 0.10 +1.6
1,130,793 + Psyr_0996 0.46 -2.0
1,130,793 + Psyr_0996 0.46 -0.0
1,130,794 - Psyr_0996 0.46 -0.3
1,130,794 - Psyr_0996 0.46 -0.7
1,130,794 - Psyr_0996 0.46 -0.8
1,130,794 - Psyr_0996 0.46 -0.5
1,130,797 + Psyr_0996 0.46 -0.7
1,130,797 + Psyr_0996 0.46 -1.5
1,130,798 - Psyr_0996 0.46 -0.4
1,130,798 - Psyr_0996 0.46 +0.4
1,130,798 - Psyr_0996 0.46 +0.7
1,130,798 - Psyr_0996 0.46 +0.1
1,130,798 - Psyr_0996 0.46 -0.6
1,130,798 - Psyr_0996 0.46 +0.4
1,130,798 - Psyr_0996 0.46 +0.5
1,131,083 - Psyr_0996 0.83 -0.7
1,131,083 - Psyr_0996 0.83 +0.4
1,131,363 + Psyr_0997 0.28 -1.1
1,131,363 + Psyr_0997 0.28 +0.1
1,131,363 + Psyr_0997 0.28 -0.0
1,131,363 + Psyr_0997 0.28 -0.8
1,131,363 + Psyr_0997 0.28 -0.5
1,131,364 - Psyr_0997 0.28 -1.0
1,131,364 - Psyr_0997 0.28 +0.3
1,131,364 - Psyr_0997 0.28 -1.5
1,131,364 - Psyr_0997 0.28 -1.1
1,131,512 + Psyr_0997 0.66 -0.3
1,131,512 + Psyr_0997 0.66 -0.9
1,131,513 - Psyr_0997 0.67 +0.1
1,131,555 + Psyr_0997 0.78 -0.1
1,131,555 + Psyr_0997 0.78 -0.4
1,131,555 + Psyr_0997 0.78 -1.4
1,131,555 + Psyr_0997 0.78 -0.4
1,131,555 + Psyr_0997 0.78 +0.2
1,131,555 + Psyr_0997 0.78 -1.8
1,131,556 - Psyr_0997 0.78 -0.8
1,131,556 - Psyr_0997 0.78 +0.1
1,131,556 - Psyr_0997 0.78 +0.3
1,131,556 - Psyr_0997 0.78 +0.6
1,131,556 - Psyr_0997 0.78 +0.8
1,131,556 - Psyr_0997 0.78 -0.2
1,131,556 - Psyr_0997 0.78 -0.4
1,131,556 - Psyr_0997 0.78 -0.3
1,131,556 - Psyr_0997 0.78 -1.4
1,131,802 + Psyr_0998 0.20 +1.3
1,131,802 + Psyr_0998 0.20 -0.7
1,131,802 + Psyr_0998 0.20 +0.2
1,132,105 + Psyr_0998 0.62 -1.0
1,132,105 + Psyr_0998 0.62 +0.2
1,132,106 - Psyr_0998 0.62 -0.1
1,132,636 + Psyr_0999 0.23 -0.5

Or see this region's nucleotide sequence