Strain Fitness in Pseudomonas putida KT2440 around PP_5183

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
5,909,867	+		PP_5182	0.35	-1.1
5,909,867	+		PP_5182	0.35	-1.2
5,909,867	+		PP_5182	0.35	-1.7
5,909,868	-		PP_5182	0.35	-1.0
5,909,918	+		PP_5182	0.39	-4.0
5,909,919	-		PP_5182	0.39	-0.7
5,909,919	-		PP_5182	0.39	-0.7
5,909,921	+		PP_5182	0.39	-2.4
5,909,921	+		PP_5182	0.39	-1.2
5,909,994	-		PP_5182	0.44	-1.8
5,909,994	-		PP_5182	0.44	-2.4
5,910,189	-		PP_5182	0.59	+0.3
5,910,348	-		PP_5182	0.70	-2.1
5,910,417	+		PP_5182	0.75	-1.7
5,910,417	+		PP_5182	0.75	+0.3
5,910,417	+		PP_5182	0.75	-1.2
5,910,418	-		PP_5182	0.76	-0.9
5,910,498	-		PP_5182	0.81	-1.4
5,910,571	+		PP_5182	0.87	-2.0
5,910,571	+		PP_5182	0.87	+0.3
5,910,572	-		PP_5182	0.87	-1.2
5,910,572	-		PP_5182	0.87	-2.0
5,910,674	+				-1.3
5,910,674	+				-1.4
5,910,763	+				-0.0
5,910,876	+				-2.6
5,910,876	+				-1.4
5,910,911	+				-1.2
5,910,912	-				-1.1
5,910,992	+		PP_5183	0.14	-1.2
5,911,026	+		PP_5183	0.17	-1.4
5,911,047	-		PP_5183	0.18	-0.5
5,911,058	-		PP_5183	0.19	-3.7
5,911,058	-		PP_5183	0.19	-1.0
5,911,079	+		PP_5183	0.21	-1.7
5,911,593	-		PP_5183	0.58	-0.3
5,911,593	-		PP_5183	0.58	-1.2
5,911,727	+		PP_5183	0.68	-1.9
5,911,728	-		PP_5183	0.68	-0.9
5,911,775	+		PP_5183	0.72	-0.4
5,911,775	+		PP_5183	0.72	-0.9
5,911,841	+		PP_5183	0.77	+0.3
5,911,842	-		PP_5183	0.77	-1.8
5,911,842	-		PP_5183	0.77	+0.8
5,911,842	-		PP_5183	0.77	+0.3
5,911,952	+		PP_5183	0.85	-0.6
5,911,955	+		PP_5183	0.85	-1.5
5,911,955	+		PP_5183	0.85	-0.9
5,911,955	+				+0.9
5,911,956	-		PP_5183	0.85	-1.2
5,911,973	+		PP_5183	0.86	-0.4
5,912,151	+				-0.1
5,912,157	+				-1.3
5,912,157	+				-1.9
5,912,157	+				+1.6
5,912,157	+				-2.7
5,912,157	+				-1.1
5,912,158	-				-1.1
5,912,158	-				-1.6
5,912,158	-				-0.5
5,912,158	-				+0.6
5,912,161	+				-0.6
5,912,161	+				-3.7
5,912,161	+				-0.4
5,912,161	+				-1.5
5,912,162	-				-0.8
5,912,162	-				+0.3
5,912,162	-				-0.8
5,912,173	+				-1.4
5,912,173	+				-0.8
5,912,173	+				-1.1
5,912,174	-				-0.2
5,912,174	-				-0.3
5,912,174	-				+0.2
5,912,174	-				-0.4
5,912,174	-				+0.1
5,912,174	-				-2.0
5,912,214	-				-1.4
5,912,214	-				-0.8
5,912,247	+				+0.3
5,912,270	+				-1.7
5,912,270	+				+0.2
5,912,351	+				+0.3
5,912,351	+				-0.6
5,912,352	-				+0.2
5,912,404	+				-1.1
5,912,466	+				+0.7
5,912,467	-				+0.6
5,912,467	-				-0.1
5,912,467	-				-2.8
5,912,469	+				-0.4
5,912,558	-				-2.4
5,912,566	-				+0.3
5,912,576	+				-0.7
5,912,617	+				+0.3
5,912,618	-				-0.1
5,912,618	-				+0.3
5,912,618	-				-1.0
5,912,618	-				-1.7
5,912,661	+				-1.0
5,912,661	+				+0.3
5,912,661	+				+0.3
5,912,661	+				+0.1
5,912,661	+				+0.3
5,912,662	-				-2.0
5,912,662	-				-2.7
5,912,662	-				-0.3
5,912,662	-				-2.0
5,912,712	-				-1.8
5,912,804	+				-0.5
5,912,804	+				+0.0
5,912,827	+				-1.2
5,912,827	+				-0.7
5,912,828	-				+0.4
5,912,828	-				+0.3
5,912,828	-				+1.5
5,912,856	+				-1.5
5,912,857	-				+0.5
5,912,857	-				-1.1
5,912,857	-				-1.2
5,913,017	-		PP_5184	0.21	-0.3
5,913,017	-		PP_5184	0.21	+0.3
5,913,151	+		PP_5184	0.30	-2.2
5,913,152	-		PP_5184	0.31	-0.5