Strain Fitness in Pseudomonas putida KT2440 around PP_4638

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
5,260,992	+		PP_4637	0.26	-0.2
5,260,993	-		PP_4637	0.26	-0.5
5,260,993	-		PP_4637	0.26	-0.5
5,260,993	-		PP_4637	0.26	+0.7
5,261,030	-		PP_4637	0.31	-0.9
5,261,119	+		PP_4637	0.42	-0.4
5,261,165	-		PP_4637	0.47	-1.4
5,261,176	+		PP_4637	0.48	-0.3
5,261,176	+		PP_4637	0.48	+0.6
5,261,278	+		PP_4637	0.61	+0.8
5,261,278	+		PP_4637	0.61	+0.3
5,261,278	+		PP_4637	0.61	+0.6
5,261,279	-		PP_4637	0.61	-0.3
5,261,279	-		PP_4637	0.61	+0.2
5,261,279	-		PP_4637	0.61	+1.5
5,261,279	-		PP_4637	0.61	-0.3
5,261,279	-		PP_4637	0.61	+0.6
5,261,350	+		PP_4637	0.70	+0.8
5,261,350	+		PP_4637	0.70	-1.1
5,261,351	-		PP_4637	0.70	-0.6
5,261,351	-		PP_4637	0.70	+0.9
5,261,351	-		PP_4637	0.70	-0.1
5,261,462	+		PP_4637	0.83	+1.4
5,261,462	+		PP_4637	0.83	-0.2
5,261,463	-		PP_4637	0.83	-0.0
5,261,585	+				-0.7
5,261,585	+				+0.9
5,261,586	-				+0.7
5,261,586	-				-0.1
5,261,586	-				+0.6
5,261,586	-				-0.1
5,261,827	+				+0.3
5,261,828	-				-0.0
5,261,875	-				+0.6
5,261,875	-				-0.1
5,262,138	+		PP_4638	0.21	+0.3
5,262,139	-		PP_4638	0.21	+0.4
5,262,305	+		PP_4638	0.32	-1.3
5,262,305	+		PP_4638	0.32	+1.0
5,262,305	+		PP_4638	0.32	-0.9
5,262,394	-		PP_4638	0.38	+0.9
5,262,394	-		PP_4638	0.38	+0.1
5,262,592	+		PP_4638	0.51	+0.5
5,262,598	+		PP_4638	0.52	+1.5
5,262,599	-		PP_4638	0.52	+0.8
5,262,683	+		PP_4638	0.57	-0.6
5,262,843	-		PP_4638	0.68	-0.5
5,263,040	+		PP_4638	0.81	+0.0
5,263,040	+		PP_4638	0.81	+0.7
5,263,040	+		PP_4638	0.81	+0.1
5,263,040	+		PP_4638	0.81	-0.7
5,263,040	+		PP_4638	0.81	+1.1
5,263,040	+		PP_4638	0.81	+0.5
5,263,040	+		PP_4638	0.81	-0.1
5,263,041	-		PP_4638	0.82	-1.7
5,263,041	-		PP_4638	0.82	+1.0
5,263,041	-		PP_4638	0.82	-0.6
5,263,041	-		PP_4638	0.82	+0.5
5,263,041	-		PP_4638	0.82	-0.1
5,263,041	-		PP_4638	0.82	-0.2
5,263,041	-		PP_4638	0.82	-0.3
5,263,041	-		PP_4638	0.82	+0.5
5,263,041	-		PP_4638	0.82	-0.3
5,263,042	+		PP_4638	0.82	+0.0
5,263,042	+		PP_4638	0.82	+0.1
5,263,042	+		PP_4638	0.82	+0.7
5,263,042	+		PP_4638	0.82	+0.7
5,263,043	-		PP_4638	0.82	-1.3
5,263,043	-		PP_4638	0.82	-0.7
5,263,043	-		PP_4638	0.82	+0.7
5,263,043	-		PP_4638	0.82	+1.3
5,263,400	-		PP_4639	0.13	+0.4
5,263,400	-		PP_4639	0.13	-0.7
5,263,465	+		PP_4639	0.20	-0.0
5,263,465	+		PP_4639	0.20	+0.8
5,263,465	+		PP_4639	0.20	+1.1
5,263,662	+		PP_4639	0.40	+0.2
5,263,715	+		PP_4639	0.45	-0.8
5,263,715	+		PP_4639	0.45	-0.6
5,263,716	-		PP_4639	0.45	+1.0
5,263,716	-		PP_4639	0.45	-0.8
5,263,716	-		PP_4639	0.45	+0.6
5,263,716	-		PP_4639	0.45	+0.3
5,263,888	+		PP_4639	0.63	-1.0
5,263,888	+		PP_4639	0.63	-0.7
5,263,888	+		PP_4639	0.63	+0.1
5,263,888	+		PP_4639	0.63	-0.3
5,263,888	+		PP_4639	0.63	+0.7
5,263,889	-		PP_4639	0.63	+0.5
5,263,889	-		PP_4639	0.63	-0.2
5,264,017	+		PP_4639	0.76	-0.9
5,264,018	-		PP_4639	0.76	+0.5
5,264,018	-		PP_4639	0.76	-0.5
5,264,018	-		PP_4639	0.76	-0.2
5,264,055	+		PP_4639	0.80	-0.6
5,264,055	+		PP_4639	0.80	+0.2
5,264,055	+		PP_4639	0.80	-1.2
5,264,055	+		PP_4639	0.80	+0.3
5,264,055	+		PP_4639	0.80	-1.1
5,264,056	-		PP_4639	0.80	-0.1
5,264,056	-		PP_4639	0.80	+0.4
5,264,056	-		PP_4639	0.80	-0.5
5,264,182	+				+0.5
5,264,182	+				+2.2
5,264,182	+				+0.4
5,264,183	-				+0.5
5,264,183	-				-0.5
5,264,183	-				+0.8
5,264,183	-				-1.6
5,264,183	-				-0.6
5,264,183	-				+2.3
5,264,314	+				+0.0
5,264,315	-				-0.7